dbBact sequence annotation

term enrichment score

Term	Score
usa born	0.200000
LOWER IN non usa born	0.200000
toronto	0.181818
LOWER IN asian	0.181818
hispanic or latin american	0.166667
LOWER IN vancomycin	0.166667
LOWER IN neomycin	0.166667
caucasian	0.166667
european	0.166667
LOWER IN thailand	0.142857
LOWER IN 1-month-old human stage	0.142857
LOWER IN metronidazole	0.133333
belgium	0.125000
kingdom of denmark	0.125000
LOWER IN rural community	0.105263
crohn's disease	0.100000
state of new york	0.100000
1-year-old human stage	0.086957
LOWER IN antibiotic	0.083333
age	0.068966
state of california	0.058824
infant	0.058824
homo sapiens	0.057348
feces	0.049689
LOWER IN male	0.048780
LOWER IN child	0.045455
adult	0.044199
united states of america	0.039216
female	0.028169
LOWER IN control	0.010363
control	0.010363

Fraction of dbbact annotations with this term covered by the query

Term	Score
usa born	0.500000
LOWER IN non usa born	0.500000
toronto	0.333333
LOWER IN asian	0.333333
hispanic or latin american	0.250000
LOWER IN vancomycin	0.250000
LOWER IN neomycin	0.250000
caucasian	0.250000
european	0.250000
LOWER IN thailand	0.166667
LOWER IN 1-month-old human stage	0.166667
LOWER IN metronidazole	0.142857
belgium	0.125000
kingdom of denmark	0.125000
LOWER IN rural community	0.090909
crohn's disease	0.083333
state of new york	0.083333
1-year-old human stage	0.066667
LOWER IN antibiotic	0.062500
age	0.047619
state of california	0.038462
infant	0.038462
LOWER IN male	0.030303
homo sapiens	0.029520
LOWER IN child	0.027778
feces	0.025478
adult	0.023121
united states of america	0.020243
female	0.015873
LOWER IN control	0.005405
control	0.005405

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
united states of america	0.625000
adult	0.500000
crohn's disease	0.125000
LOWER IN control	0.125000
belgium	0.125000
usa born	0.125000
LOWER IN non usa born	0.125000
hispanic or latin american	0.125000
LOWER IN child	0.125000
toronto	0.125000
control	0.125000
LOWER IN antibiotic	0.125000
LOWER IN vancomycin	0.125000
LOWER IN metronidazole	0.125000
LOWER IN neomycin	0.125000
state of california	0.125000
LOWER IN thailand	0.125000
LOWER IN rural community	0.125000
female	0.125000
LOWER IN male	0.125000
caucasian	0.125000
european	0.125000
LOWER IN asian	0.125000
state of new york	0.125000
age	0.125000
1-year-old human stage	0.125000
LOWER IN 1-month-old human stage	0.125000
infant	0.125000
kingdom of denmark	0.125000

Exp. ID	User ID	Description	Date	Region	Flag	Sequences
398	amnon	high in crohn's disease compared to control in feces homo sapiens belgium	2018-11-15	v4	No	1 / 68
644	amnon	lower in individuals born in latin america compared to indivuals born in usa ( high in usa born compared to non usa born in feces homo sapiens united states of america adult hispanic or latin american )	2020-08-31	v4	No	1 / 77
10	amnon	positively correlated with age (6-35) ( high in adult compared to child in feces homo sapiens toronto )	2016-10-27	v4	No	1 / 228
683	amnon	lower in antibiotic treatment (combined 3 antibiotics) compared to pre-treatment ( high in control compared to antibiotic vancomycin metronidazole neomycin in feces homo sapiens united states of america adult state of california )	2028-03-04	v4	No	1 / 301
400	amnon	lower in people from thailand compared to 2nd generation immigrants to usa ( high in united states of america compared to thailand rural community in feces homo sapiens )	2018-11-18	v4	No	1 / 343
63	amnon	high in female compared to male in feces homo sapiens united states of america	2017-12-04	v4	No	1 / 384
650	amnon	high in caucasian european compared to asian in feces homo sapiens united states of america adult state of new york	2020-09-12	v4	No	1 / 475
273	amnon	high in age 1-year-old human stage compared to 1-month-old human stage in feces homo sapiens infant kingdom of denmark	2018-01-14	v4	No	1 / 557

Taxonomy: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Veillonellaceae