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Search result for sequence:
TACGTAGGTGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGAGCGCAGGCGGGAAGGTAAGTCTATCTTAAAAGTGCGGGGCTCAACCCCGTGAGGGGATAGAAACTATCATTCTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGT
Annotations
F-Scores
Recall
Precision
term enrichment score
Term
Score
sus scrofa
0.403846
pig
0.403846
ireland
0.307692
rumen
0.303030
bos taurus
0.294737
holstein-friesian bull
0.272727
holstein dairy cow
0.200000
state of mississippi
0.200000
cow
0.184615
female organism
0.181818
pregnancy
0.169014
ruminal fluid
0.133333
farm
0.113208
commonwealth of pennsylvania
0.111111
duroc pig
0.111111
high milk yield
0.111111
LOWER IN low milk yield
0.111111
age 100 days
0.111111
farm 2
0.111111
LOWER IN farm 1
0.111111
jinhua city prefecture
0.111111
jinhua pig
0.111111
660 days
0.111111
LOWER IN 605 days
0.111111
early pregnancy
0.111111
first pregnancy
0.111111
LOWER IN multiple pregnancies
0.111111
LOWER IN jersey cow
0.111111
LOWER IN restricted diet
0.111111
nanchang city prefecture
0.105263
age 140 days
0.105263
province of quebec
0.105263
lamb
0.100000
state of nebraska
0.100000
LOWER IN left colon
0.100000
rumen liquid
0.095238
shandong province
0.095238
state of tennessee
0.095238
LOWER IN right colon
0.095238
normal diet
0.095238
adult organism
0.090909
jejunum
0.086957
belgium
0.083333
male organism
0.076923
sheep
0.074074
ovis aries
0.068966
duodenum
0.068966
LOWER IN female organism
0.066667
crohn's disease
0.066667
zoological garden
0.064516
ileum
0.058824
age
0.054054
united kingdom
0.050000
research facility
0.046332
canada
0.043478
diet
0.040816
child
0.036364
LOWER IN caecum
0.034483
feces
0.033453
male
0.033333
china
0.029851
united states of america
0.029666
LOWER IN female
0.024390
female
0.024390
adult
0.009901
LOWER IN control
0.009709
control
0.009709
homo sapiens
0.006557
LOWER IN feces
0.005540
Fraction of dbbact annotations with this term covered by the query
Term
Score
duroc pig
0.500000
high milk yield
0.500000
LOWER IN low milk yield
0.500000
holstein dairy cow
0.500000
age 100 days
0.500000
farm 2
0.500000
LOWER IN farm 1
0.500000
jinhua city prefecture
0.500000
jinhua pig
0.500000
660 days
0.500000
LOWER IN 605 days
0.500000
holstein-friesian bull
0.500000
early pregnancy
0.500000
first pregnancy
0.500000
LOWER IN multiple pregnancies
0.500000
LOWER IN jersey cow
0.500000
state of mississippi
0.500000
LOWER IN restricted diet
0.500000
ireland
0.400000
sus scrofa
0.375000
pig
0.375000
nanchang city prefecture
0.333333
age 140 days
0.333333
province of quebec
0.333333
lamb
0.250000
state of nebraska
0.250000
LOWER IN left colon
0.250000
bos taurus
0.222222
rumen
0.217391
rumen liquid
0.200000
shandong province
0.200000
state of tennessee
0.200000
LOWER IN right colon
0.200000
normal diet
0.200000
cow
0.181818
pregnancy
0.153846
female organism
0.142857
jejunum
0.142857
ruminal fluid
0.142857
belgium
0.125000
male organism
0.100000
commonwealth of pennsylvania
0.100000
sheep
0.090909
farm
0.081081
ovis aries
0.076923
duodenum
0.076923
LOWER IN female organism
0.071429
crohn's disease
0.071429
adult organism
0.071429
zoological garden
0.066667
ileum
0.055556
age
0.047619
united kingdom
0.041667
canada
0.033333
diet
0.030303
child
0.025641
research facility
0.024691
LOWER IN caecum
0.023810
male
0.022727
feces
0.017391
china
0.016216
united states of america
0.015444
LOWER IN female
0.015152
female
0.015152
adult
0.005376
LOWER IN control
0.005263
control
0.005263
homo sapiens
0.003460
LOWER IN feces
0.002899
Fraction of annotations for the query sequences containing the term
Term
Score
rumen
0.500000
feces
0.437500
sus scrofa
0.437500
pig
0.437500
bos taurus
0.437500
research facility
0.375000
united states of america
0.375000
ireland
0.250000
female organism
0.250000
china
0.187500
farm
0.187500
holstein-friesian bull
0.187500
cow
0.187500
pregnancy
0.187500
holstein dairy cow
0.125000
commonwealth of pennsylvania
0.125000
adult organism
0.125000
ruminal fluid
0.125000
state of mississippi
0.125000
male
0.062500
male organism
0.062500
LOWER IN female
0.062500
LOWER IN female organism
0.062500
nanchang city prefecture
0.062500
duroc pig
0.062500
age 140 days
0.062500
high milk yield
0.062500
LOWER IN low milk yield
0.062500
rumen liquid
0.062500
shandong province
0.062500
crohn's disease
0.062500
LOWER IN control
0.062500
homo sapiens
0.062500
belgium
0.062500
ovis aries
0.062500
child
0.062500
sheep
0.062500
lamb
0.062500
age 100 days
0.062500
farm 2
0.062500
LOWER IN farm 1
0.062500
jinhua city prefecture
0.062500
jinhua pig
0.062500
age
0.062500
660 days
0.062500
LOWER IN 605 days
0.062500
state of nebraska
0.062500
early pregnancy
0.062500
state of tennessee
0.062500
zoological garden
0.062500
first pregnancy
0.062500
LOWER IN multiple pregnancies
0.062500
duodenum
0.062500
jejunum
0.062500
ileum
0.062500
LOWER IN caecum
0.062500
LOWER IN left colon
0.062500
LOWER IN right colon
0.062500
united kingdom
0.062500
female
0.062500
adult
0.062500
canada
0.062500
province of quebec
0.062500
LOWER IN jersey cow
0.062500
control
0.062500
diet
0.062500
normal diet
0.062500
LOWER IN restricted diet
0.062500
LOWER IN feces
0.062500
Exp. ID
User ID
Description
Date
Region
Flag
Sequences
688
amnon
high in male male organism compared to female female organism in feces research facility sus scrofa nanchang city prefecture pig china duroc pig age 140 days
2028-03-09
v4
No
1 / 39
687
amnon
high in high milk yield compared to low milk yield in research facility rumen bos taurus rumen liquid shandong province china holstein dairy cow
2028-03-09
v4
No
1 / 40
398
amnon
high in crohn's disease compared to control in feces homo sapiens belgium
2018-11-15
v4
No
1 / 68
491
amnon
common farm, rumen, ovis aries, child, ireland, sheep, lamb, age 100 days
2019-02-26
v4
No
1 / 105
424
amnon
farm dependent in feces of pigs with same genetic background ( high in farm 2 compared to farm 1 in feces farm sus scrofa jinhua city prefecture pig jinhua pig china )
2018-12-06
v4
No
1 / 136
83
amnon
higher in later timepoint (older age) in cow rumen normal diet ( high in age 660 days compared to 605 days in rumen bos taurus ireland holstein-friesian bull )
2017-03-05
v4
No
1 / 248
261
amnon
common united states of america, rumen, bos taurus, state of nebraska, cow
2017-12-10
v4
No
1 / 266
816
amnon
common feces, united states of america, pregnancy, research facility, sus scrofa, commonwealth of pennsylvania, pig, female organism, adult organism, early pregnancy
2021-07-04
v4
No
1 / 313
399
amnon
common feces, united states of america, state of tennessee, zoological garden, sus scrofa, pig
2018-11-16
v4
No
1 / 319
816
amnon
higher in sows in first pregnancy compared to later pregnancies ( high in first pregnancy compared to multiple pregnancies in feces united states of america pregnancy research facility sus scrofa commonwealth of pennsylvania pig female organism adult organism )
2021-07-04
v4
No
1 / 374
256
amnon
higher in small intestine compared to colon in pigs ( high in duodenum jejunum ileum compared to caecum left colon right colon in sus scrofa pig united kingdom )
2017-11-26
v4
No
1 / 387
470
amnon
common feces, female, pregnancy, farm, adult, sus scrofa, canada, province of quebec, pig
2019-01-14
v4
No
1 / 457
748
amnon
high in holstein dairy cow compared to jersey cow in united states of america research facility rumen bos taurus cow female organism ruminal fluid state of mississippi
2021-03-10
v4
No
1 / 638
83
amnon
common rumen, bos taurus, ireland, holstein-friesian bull
2017-03-05
v4
No
1 / 757
83
amnon
high in control diet normal diet compared to restricted diet in rumen bos taurus ireland holstein-friesian bull
2017-03-05
v4
No
1 / 1023
748
amnon
high in rumen ruminal fluid compared to feces in united states of america research facility bos taurus cow female organism state of mississippi
2021-03-10
v4
No
1 / 2716
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