Annotation details (ID: 57)

Experiment ID: 19

Field Description
namethe treatment-naive microbiome in new-onset crohn’s disease
qiita1939
datamd5446d627628b7864be31cf8b41aa08443
mapmd5ad244e792a146f744f4853b7c03b536f

Annotations Details

Exp. ID User ID Description Date Region Flag Sequences
19amnonhigher in controls compared to CD in biopsies ( high in control compared to crohn's disease in rectum terminal ileum sigmoid colon caecum colon biopsy children homo sapiens united states of america )2016-11-14v4No459
Field Description
descriptionhigher in controls compared to CD in biopsies
typediffexp
num_sequences459
regionv4
flags0
agentheatsequer
methodna
date2016-11-14
usernameamnon
privaten
allrectum
allterminal ileum
allsigmoid colon
allcaecum
allcolon
allbiopsy
allchildren
allhomo sapiens
allunited states of america
highcontrol
lowcrohn's disease

Sequences

Ontology terms (including parents)

all: eutheria children hominidae homininae geographic location craniata <chordata> experimental factor bilateria material anatomical entity colon simiiformes united states of america material entity teleostomi catarrhini mammalia anatomical entity subdivision of digestive tract amniota euarchontoglires rectum cellular organisms proximal-distal subdivision of colon deuterostomia eukaryota dipnotetrapodomorpha opisthokonta homo sapiens digestive tract diverticulum biopsy multicellular anatomical structure theria <mammalia> na specimen collection process hominoidea subdivision of tube boreoeutheria planned process haplorrhini anatomical system root eumetazoa anatomy basic component homo tetrapoda experimental process chordata gnathostomata <vertebrate> entity digestive system terminal ileum independent continuant metazoa vertebrata <metazoa> sigmoid colon sarcopterygii organ part euteleostomi primates caecum process collecting specimen from organism occurrent continuant organism organism part anatomical structure

high: material property experimental factor control role na

low: inflammatory bowel disease disease of anatomical entity crohn's disease disease na gastrointestinal system disease intestinal disease

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