dbBact

Experiment ID: 1000

Field	Description
name	metagenomic 16s rdna amplicon data of microbial diversity of guts in vietnamese humans with type 2 diabetes and nondiabetic adults
sra	prjna668251
doi	https://doi.org/10.1016/j.dib.2020.106690
datamd5	2b65da4560060f3d346266cf39b977e7
mapmd5	c0bd70c4bc6c2cac2851c0b63483a4bd

Annotations for experiment:

term enrichment score

Term	Score
viet nam	0.400000
obese body mass index status	0.250000
type 2 diabetes mellitus	0.250000
LOWER IN obese body mass index status	0.200000
LOWER IN obesity	0.181818
LOWER IN type 2 diabetes mellitus	0.181818
obesity	0.117647
female	0.025000
LOWER IN control	0.009009
control	0.008969
adult	0.008264
homo sapiens	0.005277
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
viet nam	0.250000
LOWER IN obese body mass index status	0.250000
LOWER IN obesity	0.200000
LOWER IN type 2 diabetes mellitus	0.200000
obese body mass index status	0.166667
type 2 diabetes mellitus	0.166667
obesity	0.066667
female	0.012658
LOWER IN control	0.004630
control	0.004525
adult	0.004149
homo sapiens	0.002646
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
female	1.000000
adult	1.000000
viet nam	1.000000
control	0.500000
obesity	0.500000
obese body mass index status	0.500000
type 2 diabetes mellitus	0.500000
LOWER IN obesity	0.166667
LOWER IN obese body mass index status	0.166667
LOWER IN type 2 diabetes mellitus	0.166667
LOWER IN control	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
control	1.000000
female	1.000000
adult	1.000000
viet nam	1.000000
obesity	1.000000
obese body mass index status	1.000000
type 2 diabetes mellitus	1.000000
LOWER IN obesity	1.000000
LOWER IN obese body mass index status	1.000000
LOWER IN type 2 diabetes mellitus	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1000	amnon	high in obesity obese body mass index status type 2 diabetes mellitus compared to control in feces homo sapiens female adult viet nam	2022-12-31	v3	1 / 3	approved	No
1000	amnon	high in control compared to obesity obese body mass index status type 2 diabetes mellitus in feces homo sapiens female adult viet nam	2022-12-31	v3	1 / 6	approved	No
1000	amnon	dominant feces, homo sapiens, female, obesity, adult, obese body mass index status, type 2 diabetes mellitus, viet nam	2022-12-31	v3	1 / 24	approved	No
1000	amnon	dominant feces, homo sapiens, control, female, adult, viet nam	2022-12-31	v3	1 / 26	approved	No
1000	amnon	common feces, homo sapiens, female, obesity, adult, obese body mass index status, type 2 diabetes mellitus, viet nam	2022-12-31	v3	1 / 116	approved	No
1000	amnon	common feces, homo sapiens, control, female, adult, viet nam	2022-12-31	v3	1 / 170	approved	No

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