Experiment ID: 102

Field Description
nameoral microbiome in hiv-associated periodontitis
srasrp079702
datamd5185734e4343b0f830c6dbba4b42b4af5
mapmd5dbe41c67e5bb528881817fdce7e92c91

Annotations for experiment:

term enrichment score
TermScore
atlanta0.500000
cheek0.476190
LOWER IN cheek0.266667
LOWER IN hiv infection0.137931
LOWER IN dentition0.136364
hiv infection0.121212
LOWER IN saliva0.088235
LOWER IN periodontitis0.086957
mouth0.076923
periodontitis0.074074
dentition0.072072
saliva0.031008
LOWER IN control0.009360
control0.009146
united states of america0.006873
homo sapiens0.005540
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN cheek0.500000
cheek0.500000
atlanta0.333333
LOWER IN hiv infection0.111111
LOWER IN dentition0.090909
hiv infection0.090909
LOWER IN periodontitis0.083333
periodontitis0.062500
LOWER IN saliva0.052632
mouth0.040000
dentition0.040000
saliva0.016949
LOWER IN control0.004762
control0.004651
united states of america0.003448
homo sapiens0.002778
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
united states of america1.000000
atlanta1.000000
mouth1.000000
cheek0.454545
dentition0.363636
LOWER IN dentition0.272727
LOWER IN saliva0.272727
LOWER IN control0.272727
control0.272727
saliva0.181818
LOWER IN cheek0.181818
LOWER IN hiv infection0.181818
hiv infection0.181818
periodontitis0.090909
LOWER IN periodontitis0.090909
Number of experiments associating the term to the sequence
TermScore
saliva1.000000
LOWER IN cheek1.000000
LOWER IN dentition1.000000
homo sapiens1.000000
united states of america1.000000
atlanta1.000000
mouth1.000000
dentition1.000000
LOWER IN saliva1.000000
periodontitis1.000000
LOWER IN control1.000000
cheek1.000000
control1.000000
LOWER IN hiv infection1.000000
LOWER IN periodontitis1.000000
hiv infection1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
102amnon high in hiv infection compared to control in homo sapiens united states of america cheek atlanta mouth 2017-04-04v41 / 2approvedNo
102amnon high in hiv infection compared to control in homo sapiens united states of america dentition atlanta mouth 2017-04-04v41 / 4approvedNo
102amnon high in control compared to periodontitis in homo sapiens united states of america atlanta mouth 2017-04-04v41 / 7approvedNo
102amnon high in control compared to hiv infection in homo sapiens united states of america cheek atlanta mouth 2017-04-04v41 / 15approvedNo
102amnon high in control compared to hiv infection in homo sapiens united states of america dentition atlanta mouth 2017-04-04v41 / 18approvedNo
102amnonlower in teeth compared to cheeks, saliva ( high in saliva cheek compared to dentition in homo sapiens united states of america atlanta mouth )2017-04-03v41 / 37approvedNo
102amnonlower in saliva compared to teeth, cheek ( high in cheek dentition compared to saliva in homo sapiens united states of america atlanta mouth )2017-04-03v41 / 39approvedNo
102amnonhigher in cheeks compared to teeth, saliva ( high in cheek compared to saliva dentition in homo sapiens united states of america atlanta mouth )2017-04-03v41 / 41approvedNo
102amnon high in periodontitis compared to control in homo sapiens united states of america atlanta mouth 2017-04-04v41 / 53approvedNo
102amnonhigher in teeth compared to cheeks, saliva ( high in dentition compared to saliva cheek in homo sapiens united states of america atlanta mouth )2017-04-03v41 / 63approvedNo
102amnonhigher in saliva compared to teeth, cheek ( high in saliva compared to cheek dentition in homo sapiens united states of america atlanta mouth )2017-04-03v41 / 65approvedNo

Problems / suggestions? Please visit the dbBact forum