dbBact

Experiment ID: 1036

Field	Description
name	functional and metabolic alterations of gut microbiota in children with new-onset type 1 diabetes
sra	prjna664632
doi	https://doi.org/10.1038/s41467-022-33656-4
datamd5	d41a6f715670afefd8b60e88948a0f14
mapmd5	6d23ceb2f461bae4d49b39cdc45d20f2

Annotations for experiment:

term enrichment score

Term	Score
child stage	0.400000
type 1 diabetes mellitus	0.285714
LOWER IN type 1 diabetes mellitus	0.250000
LOWER IN type i diabetes mellitus	0.222222
type i diabetes mellitus	0.222222
child	0.032787
china	0.009524
LOWER IN control	0.009091
control	0.008889
homo sapiens	0.005277
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
type 1 diabetes mellitus	0.333333
child stage	0.250000
LOWER IN type 1 diabetes mellitus	0.250000
LOWER IN type i diabetes mellitus	0.200000
type i diabetes mellitus	0.200000
child	0.016667
china	0.004785
LOWER IN control	0.004630
control	0.004525
homo sapiens	0.002646
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
child	1.000000
china	1.000000
child stage	1.000000
control	0.250000
LOWER IN type i diabetes mellitus	0.250000
LOWER IN type 1 diabetes mellitus	0.250000
type i diabetes mellitus	0.250000
type 1 diabetes mellitus	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
child	1.000000
china	1.000000
child stage	1.000000
control	1.000000
LOWER IN type i diabetes mellitus	1.000000
LOWER IN type 1 diabetes mellitus	1.000000
type i diabetes mellitus	1.000000
type 1 diabetes mellitus	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1036	amnon	high in type i diabetes mellitus type 1 diabetes mellitus compared to control in feces homo sapiens child china child stage	2023-08-15	v3	1 / 9	pending	No
1036	amnon	high in control compared to type i diabetes mellitus type 1 diabetes mellitus in feces homo sapiens child china child stage	2023-08-15	v3	1 / 12	pending	No
1036	amnon	dominant feces, homo sapiens, child, china, child stage	2023-08-15	v3	1 / 30	pending	No
1036	amnon	common feces, homo sapiens, child, china, child stage	2023-08-15	v3	1 / 61	pending	No

Problems / suggestions? Please visit the dbBact forum