dbBact

Experiment ID: 1079

Field	Description
name	vaginal and anal microbiome during chlamydia trachomatis infections
sra	prjna764037
doi	https://doi.org/10.3390/pathogens10101347
datamd5	ee1b1660ef8e617a4f2a400c644d24fe
mapmd5	b94267645ff3b8e235af8cd3984b80ec

Annotations for experiment:

term enrichment score

Term	Score
bologna	0.375000
chlamydia trachomatis infectious disease	0.333333
chlamydia trachomatis	0.333333
LOWER IN rectal swab	0.285714
LOWER IN vagina	0.250000
third decade human stage	0.240000
young adult stage	0.214286
vagina	0.122449
pathogen	0.105263
rectal swab	0.095238
italy	0.060000
female	0.024896
LOWER IN control	0.009091
adult	0.008253
homo sapiens	0.005277

Fraction of dbbact annotations with this term covered by the query

Term	Score
chlamydia trachomatis infectious disease	0.500000
chlamydia trachomatis	0.500000
LOWER IN rectal swab	0.333333
LOWER IN vagina	0.250000
bologna	0.250000
third decade human stage	0.142857
young adult stage	0.125000
vagina	0.066667
pathogen	0.066667
rectal swab	0.058824
italy	0.031250
female	0.012658
LOWER IN control	0.004630
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
female	0.750000
adult	0.750000
italy	0.750000
bologna	0.750000
young adult stage	0.750000
third decade human stage	0.750000
vagina	0.750000
rectal swab	0.250000
LOWER IN vagina	0.250000
LOWER IN rectal swab	0.250000
chlamydia trachomatis infectious disease	0.250000
LOWER IN control	0.250000
pathogen	0.250000
chlamydia trachomatis	0.250000

Number of experiments associating the term to the sequence

Term	Score
rectal swab	1.000000
LOWER IN vagina	1.000000
homo sapiens	1.000000
female	1.000000
adult	1.000000
italy	1.000000
bologna	1.000000
young adult stage	1.000000
third decade human stage	1.000000
vagina	1.000000
LOWER IN rectal swab	1.000000
chlamydia trachomatis infectious disease	1.000000
LOWER IN control	1.000000
pathogen	1.000000
chlamydia trachomatis	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
1079	amnon	Chlamydia trachomatis pathogen (other homo sapiens, vagina, pathogen, chlamydia trachomatis)	2024-02-15	v3	1 / 1	pending	No
1079	amnon	high in chlamydia trachomatis infectious disease compared to control in homo sapiens female vagina adult italy bologna young adult stage third decade human stage	2024-02-15	v3	1 / 2	pending	No
1079	amnon	high in vagina compared to rectal swab in homo sapiens female adult italy bologna young adult stage third decade human stage	2024-02-15	v3	1 / 59	pending	No
1079	amnon	high in rectal swab compared to vagina in homo sapiens female adult italy bologna young adult stage third decade human stage	2024-02-15	v3	1 / 66	pending	No

Problems / suggestions? Please visit the dbBact forum