dbBact

Experiment ID: 111

Field	Description
name	microbial community compositions in the gastrointestinal tract of chinese mongolian sheep using illumina miseq sequencing revealed high microbial diversity
sra	srp062976
sra	prjna294127
datamd5	c5db136b8ab30daba1ffff0fe3e5b05b
mapmd5	b0e3747d3f75575851195fe1c836e650

Annotations for experiment:

term enrichment score

Term	Score
mongolian sheep	0.666667
ruminant reticulum	0.400000
omasum	0.400000
LOWER IN ruminant reticulum	0.200000
LOWER IN omasum	0.200000
LOWER IN rumen	0.153846
LOWER IN rectum	0.153846
rectum	0.142857
ovis aries	0.117647
ileum	0.095238
LOWER IN ileum	0.095238
LOWER IN colon	0.083333
colon	0.080000
LOWER IN caecum	0.080000
rumen	0.074074
caecum	0.039216
china	0.009662

Fraction of dbbact annotations with this term covered by the query

Term	Score
mongolian sheep	0.500000
ruminant reticulum	0.333333
omasum	0.333333
LOWER IN ruminant reticulum	0.250000
LOWER IN omasum	0.250000
LOWER IN rumen	0.142857
LOWER IN rectum	0.142857
rectum	0.083333
LOWER IN ileum	0.066667
ovis aries	0.062500
LOWER IN colon	0.055556
ileum	0.052632
LOWER IN caecum	0.052632
colon	0.043478
rumen	0.040000
caecum	0.020408
china	0.004854

Fraction of annotations for the query sequences containing the term

Term	Score
ovis aries	1.000000
mongolian sheep	1.000000
china	1.000000
rectum	0.500000
caecum	0.500000
colon	0.500000
ileum	0.500000
ruminant reticulum	0.500000
omasum	0.500000
rumen	0.500000
LOWER IN ruminant reticulum	0.166667
LOWER IN omasum	0.166667
LOWER IN rumen	0.166667
LOWER IN rectum	0.166667
LOWER IN caecum	0.166667
LOWER IN colon	0.166667
LOWER IN ileum	0.166667

Number of experiments associating the term to the sequence

Term	Score
rectum	1.000000
caecum	1.000000
colon	1.000000
ileum	1.000000
LOWER IN ruminant reticulum	1.000000
LOWER IN omasum	1.000000
LOWER IN rumen	1.000000
ovis aries	1.000000
mongolian sheep	1.000000
china	1.000000
ruminant reticulum	1.000000
omasum	1.000000
rumen	1.000000
LOWER IN rectum	1.000000
LOWER IN caecum	1.000000
LOWER IN colon	1.000000
LOWER IN ileum	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
111	amnon	dominant rectum, caecum, colon, ileum, ovis aries, mongolian sheep, china	2017-04-09	v4	1 / 13	approved	No
111	amnon	dominant ruminant reticulum, omasum, rumen, ovis aries, mongolian sheep, china	2017-04-09	v4	1 / 18	approved	No
111	amnon	common ruminant reticulum, omasum, rumen, ovis aries, mongolian sheep, china	2017-04-09	v4	1 / 253	approved	No
111	amnon	high in ruminant reticulum omasum rumen compared to rectum caecum colon ileum in ovis aries mongolian sheep china	2017-04-09	v4	1 / 294	approved	No
111	amnon	common rectum, caecum, colon, ileum, ovis aries, mongolian sheep, china	2017-04-09	v4	1 / 330	approved	No
111	amnon	high in rectum caecum colon ileum compared to ruminant reticulum omasum rumen in ovis aries mongolian sheep china	2017-04-09	v4	1 / 464	approved	No

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