dbBact

Experiment ID: 133

Field	Description
name	the infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development
sra	srp056779
sra	srp056779
datamd5	8fc6fa8b9212e16f1db4eefba2cdf570
mapmd5	c982f17ba6a796d0beb5f4703d94f2a8

Annotations for experiment:

term enrichment score

Term	Score
acute respiratory illness	0.333333
LOWER IN acute respiratory illness	0.333333
respiratory system disease	0.285714
LOWER IN respiratory system disease	0.285714
nasopharynx	0.166667
australia	0.062500
infant	0.052632
LOWER IN control	0.008929
control	0.008734
homo sapiens	0.005168

Fraction of dbbact annotations with this term covered by the query

Term	Score
acute respiratory illness	0.500000
LOWER IN acute respiratory illness	0.500000
respiratory system disease	0.333333
LOWER IN respiratory system disease	0.333333
nasopharynx	0.090909
australia	0.032258
infant	0.027027
LOWER IN control	0.004545
control	0.004444
homo sapiens	0.002591

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
nasopharynx	1.000000
infant	1.000000
australia	1.000000
acute respiratory illness	0.250000
respiratory system disease	0.250000
LOWER IN control	0.250000
control	0.250000
LOWER IN acute respiratory illness	0.250000
LOWER IN respiratory system disease	0.250000

Number of experiments associating the term to the sequence

Term	Score
acute respiratory illness	1.000000
respiratory system disease	1.000000
LOWER IN control	1.000000
homo sapiens	1.000000
nasopharynx	1.000000
infant	1.000000
australia	1.000000
control	1.000000
LOWER IN acute respiratory illness	1.000000
LOWER IN respiratory system disease	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
133	amnon	high freq. in infants 0-1 years (dominant homo sapiens, nasopharynx, infant, australia)	2017-04-16	v4	1 / 11	approved	No
133	amnon	common in infants 0-1 years (common homo sapiens, nasopharynx, infant, australia)	2017-04-16	v4	1 / 16	approved	No
133	amnon	higher in healthy babies (<1yr) compared to acute respiratory illness ( high in control compared to acute respiratory illness respiratory system disease in homo sapiens nasopharynx infant australia )	2017-04-16	v4	1 / 80	approved	No
133	amnon	lower in healthy babies (<1yr) compared to acute respiratory illness ( high in acute respiratory illness respiratory system disease compared to control in homo sapiens nasopharynx infant australia )	2017-04-16	v4	1 / 83	approved	No

Problems / suggestions? Please visit the dbBact forum