dbBact

Experiment ID: 187

Field	Description
name	a benign helminth alters the host immune system and the gut microbiota in a rat model system
sra	erp014631
sra	prjeb13095
datamd5	a74f2e69b33942017a75805f9988f1a1
mapmd5	cf0578d15e5be299fc59b3822b7f5e56

Annotations for experiment:

term enrichment score

Term	Score
wistar rat	0.500000
35 weeks	0.333333
LOWER IN 25 weeks	0.333333
age 25 weeks	0.333333
LOWER IN age 35 weeks	0.333333
rattus	0.285714
czech republic	0.222222
LOWER IN age	0.181818
late time points	0.166667
LOWER IN early time points	0.166667
early timepoints	0.153846
LOWER IN late timepoints	0.153846
rat	0.111111
age	0.080000
research facility	0.010638
feces	0.004739

Fraction of dbbact annotations with this term covered by the query

Term	Score
35 weeks	0.500000
LOWER IN 25 weeks	0.500000
age 25 weeks	0.500000
LOWER IN age 35 weeks	0.500000
wistar rat	0.333333
rattus	0.166667
LOWER IN age	0.142857
czech republic	0.125000
late time points	0.125000
LOWER IN early time points	0.125000
early timepoints	0.111111
LOWER IN late timepoints	0.111111
rat	0.058824
age	0.047619
research facility	0.005348
feces	0.002375

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
research facility	1.000000
rattus	1.000000
czech republic	1.000000
rat	1.000000
wistar rat	1.000000
age	0.250000
late time points	0.250000
35 weeks	0.250000
LOWER IN early time points	0.250000
LOWER IN 25 weeks	0.250000
early timepoints	0.250000
age 25 weeks	0.250000
LOWER IN age	0.250000
LOWER IN late timepoints	0.250000
LOWER IN age 35 weeks	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
research facility	1.000000
rattus	1.000000
czech republic	1.000000
rat	1.000000
wistar rat	1.000000
age	1.000000
late time points	1.000000
35 weeks	1.000000
LOWER IN early time points	1.000000
LOWER IN 25 weeks	1.000000
early timepoints	1.000000
age 25 weeks	1.000000
LOWER IN age	1.000000
LOWER IN late timepoints	1.000000
LOWER IN age 35 weeks	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
187	amnon	dominant feces, research facility, rattus, czech republic, rat, wistar rat	2017-08-23	v4	1 / 13	approved	No
187	amnon	negatively correlated with age 25-35 weeks ( high in early timepoints age 25 weeks compared to age late timepoints age 35 weeks in feces research facility rattus czech republic rat wistar rat )	2017-08-23	v4	1 / 23	approved	No
187	amnon	positively correlated with age 25-35 weeks ( high in age late time points 35 weeks compared to early time points 25 weeks in feces research facility rattus czech republic rat wistar rat )	2017-08-23	v4	1 / 33	approved	No
187	amnon	common feces, research facility, rattus, czech republic, rat, wistar rat	2017-08-23	v4	1 / 351	approved	No

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