dbBact

Experiment ID: 24

Field	Description
name	rapid change of fecal microbiome and disappearance of clostridium difficile in a colonized infant after transition from breast milk to cow milk
sra	srp079699
sra	prjna331150
datamd5	ab44aef66f84a4062f8512559cf982d8
mapmd5	b890830abc7f005c71678f7ddc753f34

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN mammalian milk beverage	0.500000
mammalian milk beverage	0.500000
LOWER IN breast milk	0.400000
breast milk	0.250000
infant	0.052632
homo sapiens	0.005291
feces	0.004619

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN mammalian milk beverage	0.500000
mammalian milk beverage	0.500000
LOWER IN breast milk	0.333333
breast milk	0.166667
infant	0.027027
homo sapiens	0.002653
feces	0.002315

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
breast milk	0.500000
LOWER IN mammalian milk beverage	0.500000
mammalian milk beverage	0.500000
LOWER IN breast milk	0.500000

Number of experiments associating the term to the sequence

Term	Score
breast milk	1.000000
LOWER IN mammalian milk beverage	1.000000
feces	1.000000
homo sapiens	1.000000
infant	1.000000
mammalian milk beverage	1.000000
LOWER IN breast milk	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
24	amnon	appears on transition to cow milk ( high in mammalian milk beverage compared to breast milk in feces homo sapiens infant )	2016-12-01	v4	1 / 21	approved	No
24	amnon	disappears on transition to cow milk ( high in breast milk compared to mammalian milk beverage in feces homo sapiens infant )	2016-12-01	v4	1 / 35	approved	No

Problems / suggestions? Please visit the dbBact forum