dbBact

Experiment ID: 240

Field	Description
name	the dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
sra	prjna231909
http	https://pubs.broadinstitute.org/diabimmune/data/9
datamd5	0d09d819260286393e1f93f3127d2e7d
mapmd5	17bced15922fe5893c1576703b1a5d07

Annotations for experiment:

term enrichment score

Term	Score
age < 3 years	0.400000
finland	0.166667
LOWER IN under-1-year-old human stage	0.142857
under-1-year-old human stage	0.125000
LOWER IN 1-year-old human stage	0.125000
1-year-old human stage	0.105263
age	0.086957
infant	0.052632
homo sapiens	0.005277
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
age < 3 years	0.333333
LOWER IN under-1-year-old human stage	0.100000
finland	0.090909
under-1-year-old human stage	0.083333
LOWER IN 1-year-old human stage	0.083333
1-year-old human stage	0.066667
age	0.047619
infant	0.027027
homo sapiens	0.002646
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
finland	1.000000
age	0.500000
age < 3 years	0.500000
1-year-old human stage	0.250000
LOWER IN under-1-year-old human stage	0.250000
under-1-year-old human stage	0.250000
LOWER IN 1-year-old human stage	0.250000

Number of experiments associating the term to the sequence

Term	Score
age	1.000000
1-year-old human stage	1.000000
LOWER IN under-1-year-old human stage	1.000000
feces	1.000000
homo sapiens	1.000000
infant	1.000000
finland	1.000000
age < 3 years	1.000000
under-1-year-old human stage	1.000000
LOWER IN 1-year-old human stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
240	amnon	high freq. in infants age <3 years (dominant feces, homo sapiens, infant, finland, age < 3 years)	2017-11-12	v4	1 / 21	approved	No
240	amnon	higher in infants age<1 year compared to 1-3 years in baby feces ( high in age under-1-year-old human stage compared to 1-year-old human stage in feces homo sapiens infant finland )	2017-11-12	v4	1 / 35	approved	No
240	amnon	common in infants age <3 years (common feces, homo sapiens, infant, finland, age < 3 years)	2017-11-12	v4	1 / 36	approved	No
240	amnon	lower in infants age<1 year compared to 1-3 years in baby feces ( high in age 1-year-old human stage compared to under-1-year-old human stage in feces homo sapiens infant finland )	2017-11-12	v4	1 / 567	approved	No

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