dbBact

Experiment ID: 241

Field	Description
name	variation in microbiome lps immunogenicity contributes to autoimmunity in humans
sra	prjna290380
http	https://pubs.broadinstitute.org/diabimmune/three-country-cohort
datamd5	25c60c73729865b33ab63d304725bd06
mapmd5	746eae02d250f4243ccc00206f0137a9

Annotations for experiment:

term enrichment score

Term	Score
age < 3 years	0.480000
estonia	0.307692
LOWER IN russia	0.222222
LOWER IN estonia	0.222222
LOWER IN finland	0.166667
russia	0.137931
finland	0.137931
LOWER IN age 1-3 years	0.117647
age 1-3 years	0.111111
LOWER IN 2-year-old human stage	0.090909
2-year-old human stage	0.083333
LOWER IN under-1-year-old human stage	0.083333
under-1-year-old human stage	0.076923
LOWER IN 1-year-old human stage	0.076923
age	0.071429
1-year-old human stage	0.068966
infant	0.052632
homo sapiens	0.005236
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN russia	0.500000
LOWER IN estonia	0.500000
age < 3 years	0.333333
estonia	0.333333
LOWER IN age 1-3 years	0.333333
age 1-3 years	0.250000
LOWER IN finland	0.200000
LOWER IN 2-year-old human stage	0.125000
2-year-old human stage	0.100000
LOWER IN under-1-year-old human stage	0.100000
russia	0.090909
finland	0.090909
under-1-year-old human stage	0.083333
LOWER IN 1-year-old human stage	0.083333
1-year-old human stage	0.066667
age	0.047619
infant	0.027027
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
age < 3 years	0.857143
russia	0.285714
estonia	0.285714
finland	0.285714
LOWER IN finland	0.142857
age	0.142857
LOWER IN russia	0.142857
LOWER IN estonia	0.142857
age 1-3 years	0.071429
2-year-old human stage	0.071429
1-year-old human stage	0.071429
LOWER IN under-1-year-old human stage	0.071429
under-1-year-old human stage	0.071429
LOWER IN age 1-3 years	0.071429
LOWER IN 2-year-old human stage	0.071429
LOWER IN 1-year-old human stage	0.071429

Number of experiments associating the term to the sequence

Term	Score
russia	1.000000
LOWER IN finland	1.000000
feces	1.000000
homo sapiens	1.000000
infant	1.000000
age < 3 years	1.000000
age	1.000000
age 1-3 years	1.000000
2-year-old human stage	1.000000
1-year-old human stage	1.000000
LOWER IN under-1-year-old human stage	1.000000
estonia	1.000000
LOWER IN russia	1.000000
finland	1.000000
LOWER IN estonia	1.000000
under-1-year-old human stage	1.000000
LOWER IN age 1-3 years	1.000000
LOWER IN 2-year-old human stage	1.000000
LOWER IN 1-year-old human stage	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
241	amnon	higher in babies age <1 year compared to age 1-3 years ( high in age under-1-year-old human stage compared to age 1-3 years 2-year-old human stage 1-year-old human stage in feces homo sapiens infant )	2017-11-13	v4	1 / 13	approved	No
241	amnon	high freq. in babies age < 3 years in finland (dominant feces, homo sapiens, infant, finland, age < 3 years)	2017-11-13	v4	1 / 21	approved	No
241	amnon	high freq. in babies age < 3 years in russia (dominant feces, homo sapiens, infant, russia, age < 3 years)	2017-11-13	v4	1 / 23	approved	No
241	amnon	high freq. in babies age < 3 years in estonia (dominant feces, homo sapiens, infant, estonia, age < 3 years)	2017-11-13	v4	1 / 23	approved	No
241	amnon	common in babies age < 3 years in finland (common feces, homo sapiens, infant, finland, age < 3 years)	2017-11-13	v4	1 / 23	approved	No
241	amnon	common in babies age < 3 years in estonia (common feces, homo sapiens, infant, estonia, age < 3 years)	2017-11-13	v4	1 / 24	approved	No
241	amnon	common in babies age < 3 years in russia (common feces, homo sapiens, infant, russia, age < 3 years)	2017-11-13	v4	1 / 44	approved	No
241	amnon	higher in babies from finland compared to estonia ( high in finland compared to estonia in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 45	approved	No
241	amnon	higher in babies from russia compared to estonia ( high in russia compared to estonia in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 146	approved	No
241	amnon	lower in babies from russia compared to finland ( high in finland compared to russia in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 148	approved	No
241	amnon	lower in babies from finland compared to estonia ( high in estonia compared to finland in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 157	approved	No
241	amnon	lower in babies from russia compared to estonia ( high in estonia compared to russia in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 169	approved	No
241	amnon	lower in babies age <1 year compared to age 1-3 years ( high in age age 1-3 years 2-year-old human stage 1-year-old human stage compared to under-1-year-old human stage in feces homo sapiens infant )	2017-11-13	v4	1 / 173	approved	No
241	amnon	higher in babies from russia compared to finland ( high in russia compared to finland in feces homo sapiens infant age < 3 years )	2017-11-13	v4	1 / 306	approved	No

Showing 1 to 14 of 14 entries

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