Experiment ID: 241

Field Description
name variation in microbiome lps immunogenicity contributes to autoimmunity in humans
sraprjna290380
httphttps://pubs.broadinstitute.org/diabimmune/three-country-cohort
datamd525c60c73729865b33ab63d304725bd06
mapmd5746eae02d250f4243ccc00206f0137a9

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN russia0.500000
LOWER IN estonia0.500000
age < 3 years0.333333
estonia0.333333
LOWER IN age 1-3 years0.333333
age 1-3 years0.250000
LOWER IN finland0.200000
LOWER IN 2-year-old human stage0.125000
2-year-old human stage0.100000
LOWER IN under-1-year-old human stage0.100000
finland0.100000
russia0.090909
under-1-year-old human stage0.090909
LOWER IN 1-year-old human stage0.090909
1-year-old human stage0.071429
age0.047619
infant0.028571
homo sapiens0.002747
feces0.002375
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
infant1.000000
age < 3 years0.857143
russia0.285714
estonia0.285714
finland0.285714
LOWER IN finland0.142857
age0.142857
LOWER IN russia0.142857
LOWER IN estonia0.142857
age 1-3 years0.071429
2-year-old human stage0.071429
1-year-old human stage0.071429
LOWER IN under-1-year-old human stage0.071429
under-1-year-old human stage0.071429
LOWER IN age 1-3 years0.071429
LOWER IN 2-year-old human stage0.071429
LOWER IN 1-year-old human stage0.071429
Number of experiments associating the term to the sequence
TermScore
russia1.000000
LOWER IN finland1.000000
feces1.000000
homo sapiens1.000000
infant1.000000
age < 3 years1.000000
age1.000000
age 1-3 years1.000000
2-year-old human stage1.000000
1-year-old human stage1.000000
LOWER IN under-1-year-old human stage1.000000
estonia1.000000
LOWER IN russia1.000000
finland1.000000
LOWER IN estonia1.000000
under-1-year-old human stage1.000000
LOWER IN age 1-3 years1.000000
LOWER IN 2-year-old human stage1.000000
LOWER IN 1-year-old human stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
241amnonhigher in babies age <1 year compared to age 1-3 years ( high in age under-1-year-old human stage compared to age 1-3 years 2-year-old human stage 1-year-old human stage in feces homo sapiens infant )2017-11-13v41 / 13approvedNo
241amnonhigh freq. in babies age < 3 years in finland (dominant feces, homo sapiens, infant, finland, age < 3 years)2017-11-13v41 / 21approvedNo
241amnonhigh freq. in babies age < 3 years in russia (dominant feces, homo sapiens, infant, russia, age < 3 years)2017-11-13v41 / 23approvedNo
241amnonhigh freq. in babies age < 3 years in estonia (dominant feces, homo sapiens, infant, estonia, age < 3 years)2017-11-13v41 / 23approvedNo
241amnoncommon in babies age < 3 years in finland (common feces, homo sapiens, infant, finland, age < 3 years)2017-11-13v41 / 23approvedNo
241amnoncommon in babies age < 3 years in estonia (common feces, homo sapiens, infant, estonia, age < 3 years)2017-11-13v41 / 24approvedNo
241amnoncommon in babies age < 3 years in russia (common feces, homo sapiens, infant, russia, age < 3 years)2017-11-13v41 / 44approvedNo
241amnonhigher in babies from finland compared to estonia ( high in finland compared to estonia in feces homo sapiens infant age < 3 years )2017-11-13v41 / 45approvedNo
241amnonhigher in babies from russia compared to estonia ( high in russia compared to estonia in feces homo sapiens infant age < 3 years )2017-11-13v41 / 146approvedNo
241amnonlower in babies from russia compared to finland ( high in finland compared to russia in feces homo sapiens infant age < 3 years )2017-11-13v41 / 148approvedNo
241amnonlower in babies from finland compared to estonia ( high in estonia compared to finland in feces homo sapiens infant age < 3 years )2017-11-13v41 / 157approvedNo
241amnonlower in babies from russia compared to estonia ( high in estonia compared to russia in feces homo sapiens infant age < 3 years )2017-11-13v41 / 169approvedNo
241amnonlower in babies age <1 year compared to age 1-3 years ( high in age age 1-3 years 2-year-old human stage 1-year-old human stage compared to under-1-year-old human stage in feces homo sapiens infant )2017-11-13v41 / 173approvedNo
241amnonhigher in babies from russia compared to finland ( high in russia compared to finland in feces homo sapiens infant age < 3 years )2017-11-13v41 / 306approvedNo

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