dbBact

Experiment ID: 286

Field	Description
name	16s rrna gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones
sra	srp103884
datamd5	0c1caa92c0b5cf251fc3969bfc9a4b3b
mapmd5	2bd22321037ade72a9c60d6b916be31d

Annotations for experiment:

term enrichment score

Term	Score
nanning city prefecture	0.500000
sixth decade human stage	0.500000
nephrolithiasis	0.500000
LOWER IN nephrolithiasis	0.250000
china	0.009434
LOWER IN control	0.008929
control	0.008889
adult	0.008163
homo sapiens	0.005236
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
nephrolithiasis	0.500000
LOWER IN nephrolithiasis	0.500000
nanning city prefecture	0.333333
sixth decade human stage	0.333333
china	0.004739
LOWER IN control	0.004587
control	0.004484
adult	0.004098
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
adult	1.000000
nanning city prefecture	1.000000
china	1.000000
sixth decade human stage	1.000000
control	0.500000
nephrolithiasis	0.500000
LOWER IN nephrolithiasis	0.166667
LOWER IN control	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
control	1.000000
adult	1.000000
nanning city prefecture	1.000000
china	1.000000
sixth decade human stage	1.000000
nephrolithiasis	1.000000
LOWER IN nephrolithiasis	1.000000
LOWER IN control	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
286	amnon	high freq. in feces of individuals with kidney stones (dominant feces, homo sapiens, adult, nanning city prefecture, nephrolithiasis, china, sixth decade human stage)	2018-01-27	v4	1 / 20	approved	No
286	amnon	high freq. in feces of individuals without kidney stones (dominant feces, homo sapiens, control, adult, nanning city prefecture, china, sixth decade human stage)	2018-01-27	v4	1 / 22	approved	No
286	amnon	higher in feces of individuals with kidney stones ( high in nephrolithiasis compared to control in feces homo sapiens adult nanning city prefecture china sixth decade human stage )	2018-01-27	v4	1 / 54	approved	No
286	amnon	lower in feces of individuals with kidney stones ( high in control compared to nephrolithiasis in feces homo sapiens adult nanning city prefecture china sixth decade human stage )	2018-01-27	v4	1 / 83	approved	No
286	amnon	common in feces of individuals with kidney stones (common feces, homo sapiens, adult, nanning city prefecture, nephrolithiasis, china, sixth decade human stage)	2018-01-27	v4	1 / 239	approved	No
286	amnon	common in feces of individuals without kidney stones (common feces, homo sapiens, control, adult, nanning city prefecture, china, sixth decade human stage)	2018-01-27	v4	1 / 281	approved	No

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