Experiment ID: 317

Field Description
nameprimer selection impacts specific population abundances but not community dynamics in a monthly time-series 16s rrna gene amplicon analysis of coastal marine bacterioplankton
pubmedprjna412105
datamd593b5de8b0363992740efbdc6d20f91e9
mapmd538e2dc2222626939f8fd347f49881f8b

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
depth (water) 75m0.500000
LOWER IN depth (water) 75m0.500000
depth (water) 300m0.333333
LOWER IN depth (water) 5m0.333333
LOWER IN depth (water) 300m0.333333
LOWER IN depth (water) 150m0.333333
depth (water) 150m0.250000
LOWER IN depth (water) 0cm0.250000
LOWER IN surface water0.200000
depth (water) 5m0.200000
surface water0.058824
pacific ocean0.047619
state of california0.032258
sea water0.023256
water0.018182
united states of america0.003425
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
water1.000000
sea water1.000000
state of california1.000000
pacific ocean1.000000
depth (water) 300m0.500000
depth (water) 75m0.500000
depth (water) 150m0.500000
surface water0.500000
depth (water) 5m0.500000
LOWER IN surface water0.166667
LOWER IN depth (water) 5m0.166667
LOWER IN depth (water) 0cm0.166667
LOWER IN depth (water) 300m0.166667
LOWER IN depth (water) 75m0.166667
LOWER IN depth (water) 150m0.166667
Number of experiments associating the term to the sequence
TermScore
depth (water) 300m1.000000
depth (water) 75m1.000000
depth (water) 150m1.000000
LOWER IN surface water1.000000
LOWER IN depth (water) 5m1.000000
LOWER IN depth (water) 0cm1.000000
united states of america1.000000
water1.000000
sea water1.000000
state of california1.000000
pacific ocean1.000000
surface water1.000000
depth (water) 5m1.000000
LOWER IN depth (water) 300m1.000000
LOWER IN depth (water) 75m1.000000
LOWER IN depth (water) 150m1.000000

Problems / suggestions? Please visit the dbBact forum