dbBact

Experiment ID: 327

Field	Description
name	injectable antimicrobials in commercial feedlot cattle and their effect on the nasopharyngeal microbiota and antimicrobial resistance
sra	prjna394129
datamd5	1d2527bb9f87b4724cae39cf770e0283
mapmd5	7a723bfc691129fede90f851b50f05b8

Annotations for experiment:

term enrichment score

Term	Score
nasopharynx	0.166667
cow	0.153846
bos taurus	0.100000
LOWER IN antibiotic	0.090909
antibiotic	0.083333
canada	0.057143
LOWER IN control	0.009091
control	0.008889

Fraction of dbbact annotations with this term covered by the query

Term	Score
nasopharynx	0.090909
cow	0.083333
LOWER IN antibiotic	0.055556
bos taurus	0.052632
antibiotic	0.050000
canada	0.029412
LOWER IN control	0.004630
control	0.004525

Fraction of annotations for the query sequences containing the term

Term	Score
nasopharynx	1.000000
bos taurus	1.000000
canada	1.000000
cow	1.000000
control	0.250000
LOWER IN antibiotic	0.250000
antibiotic	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
nasopharynx	1.000000
bos taurus	1.000000
canada	1.000000
cow	1.000000
control	1.000000
LOWER IN antibiotic	1.000000
antibiotic	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
327	amnon	higher in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in antibiotic compared to control in nasopharynx bos taurus canada cow )	2018-04-30	v4	1 / 4	approved	No
327	amnon	dominant nasopharynx, bos taurus, canada, cow	2018-04-30	v4	1 / 15	approved	No
327	amnon	lower in nasopharynx of antibiotics treated cows compared to cows without antibiotic injection ( high in control compared to antibiotic in nasopharynx bos taurus canada cow )	2018-04-30	v4	1 / 45	approved	No
327	amnon	common nasopharynx, bos taurus, canada, cow	2018-04-30	v4	1 / 50	approved	No

Problems / suggestions? Please visit the dbBact forum