dbBact

Field	Description
name	changes in the gut microbiota of urban subjects during an immersion in the traditional diet and lifestyle of a rainforest village
sra	erp110254
qiita	11874
datamd5	79fa547ca866379fdb8575136fe033cc
mapmd5	b9a4450f43e7e96edcb537032ebe3032

term enrichment score

Term	Score
venezuela	0.472727
amerindian	0.472727
hunter gatherer	0.276596
LOWER IN venezuela	0.272727
LOWER IN amerindian	0.272727
LOWER IN hunter gatherer	0.240000
LOWER IN obsolete_juvenile stage	0.181818
LOWER IN city	0.130435
LOWER IN united states of america	0.115385
obsolete_juvenile stage	0.111111
LOWER IN infant	0.090909
city	0.068182
LOWER IN adult	0.060606
infant	0.044444
skin	0.043478
saliva	0.029557
adult	0.007937
united states of america	0.006593
homo sapiens	0.005236
feces	0.004570

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN venezuela	0.500000
LOWER IN amerindian	0.500000
venezuela	0.333333
amerindian	0.333333
LOWER IN hunter gatherer	0.333333
LOWER IN obsolete_juvenile stage	0.333333
hunter gatherer	0.166667
LOWER IN city	0.100000
obsolete_juvenile stage	0.100000
LOWER IN united states of america	0.083333
LOWER IN infant	0.071429
city	0.041667
LOWER IN adult	0.040000
infant	0.027027
skin	0.023810
saliva	0.015385
adult	0.004098
united states of america	0.003356
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
venezuela	0.812500
amerindian	0.812500
hunter gatherer	0.812500
feces	0.375000
saliva	0.375000
skin	0.250000
LOWER IN united states of america	0.187500
LOWER IN city	0.187500
united states of america	0.187500
city	0.187500
LOWER IN venezuela	0.187500
LOWER IN amerindian	0.187500
LOWER IN hunter gatherer	0.187500
adult	0.125000
LOWER IN infant	0.125000
LOWER IN obsolete_juvenile stage	0.125000
infant	0.125000
obsolete_juvenile stage	0.125000
LOWER IN adult	0.125000

Number of experiments associating the term to the sequence

Term	Score
venezuela	1.000000
amerindian	1.000000
hunter gatherer	1.000000
LOWER IN united states of america	1.000000
LOWER IN city	1.000000
homo sapiens	1.000000
skin	1.000000
feces	1.000000
united states of america	1.000000
city	1.000000
LOWER IN venezuela	1.000000
LOWER IN amerindian	1.000000
LOWER IN hunter gatherer	1.000000
saliva	1.000000
adult	1.000000
LOWER IN infant	1.000000
LOWER IN obsolete_juvenile stage	1.000000
infant	1.000000
obsolete_juvenile stage	1.000000
LOWER IN adult	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
371	amnon	dominant feces, homo sapiens, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 11	approved	No
371	amnon	dominant homo sapiens, skin, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 14	approved	No
371	amnon	dominant homo sapiens, saliva, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 15	approved	No
371	amnon	NEGATIVELY correlated with age in amerindians ( high in infant obsolete_juvenile stage compared to adult in feces homo sapiens venezuela amerindian hunter gatherer )	2018-09-06	v4	1 / 15	approved	No
371	amnon	negatively correlated with age in amerindian saliva ( high in infant obsolete_juvenile stage compared to adult in homo sapiens saliva venezuela amerindian hunter gatherer )	2018-09-06	v4	1 / 16	approved	No
371	amnon	positively correlated with age in amerindian saliva ( high in adult compared to infant obsolete_juvenile stage in homo sapiens saliva venezuela amerindian hunter gatherer )	2018-09-06	v4	1 / 17	approved	No
371	amnon	higher in saliva of amerindians compared to western visitors ( high in venezuela amerindian hunter gatherer compared to united states of america city in homo sapiens saliva )	2018-09-06	v4	1 / 24	approved	No
371	amnon	positively correlated with age in amerindians ( high in adult compared to infant obsolete_juvenile stage in feces homo sapiens venezuela amerindian hunter gatherer )	2018-09-06	v4	1 / 27	approved	No
371	amnon	common homo sapiens, saliva, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 43	approved	No
371	amnon	lower in saliva of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens saliva )	2018-09-06	v4	1 / 60	approved	No
371	amnon	common feces, homo sapiens, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 121	approved	No
371	amnon	common homo sapiens, skin, venezuela, amerindian, hunter gatherer	2018-09-06	v4	1 / 195	approved	No
371	amnon	lower in skin of amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in homo sapiens skin )	2018-09-06	v4	1 / 195	approved	No
371	amnon	lower in amerindians compared to western visitors ( high in united states of america city compared to venezuela amerindian hunter gatherer in feces homo sapiens )	2018-09-06	v4	1 / 417	approved	No
371	amnon	higher in amerindians compared to western visitors ( high in venezuela amerindian hunter gatherer compared to united states of america city in feces homo sapiens )	2018-09-06	v4	1 / 443	approved	No
371	amnon	higher in skin of amerindians compared to western visitors ( high in venezuela amerindian hunter gatherer compared to united states of america city in homo sapiens skin )	2018-09-06	v4	1 / 854	approved	No

Showing 1 to 16 of 16 entries

Experiment ID: 371

Annotations for experiment: