Experiment ID: 399

Field Description
namegut microbiota density influences host physiology and is shaped by host and microbial factors
sraprjna413199
datamd58bcd1d2307f9b6cc59dbbf639199e251
mapmd5459447b47c990bc5f91d513e3c1bfab2

Annotations for experiment:

term enrichment score
TermScore
state of tennessee0.262295
zoological garden0.096970
african elephant0.086957
ailurus fulgens0.086957
red panda0.086957
mustela putorius furo0.086957
ferret0.086957
loxodonta africana0.083333
panthera leo0.083333
lion0.083333
macaque0.080000
rabbit0.076923
pan troglodytes0.076923
LOWER IN antibiotic0.075758
chimpanzee0.074074
gorilla gorilla0.071429
antibiotic0.070423
macaca mulatta0.068966
oryctolagus cuniculus0.066667
rattus norvegicus0.060606
sheep0.055556
ovis aries0.052632
sus scrofa0.052632
pig0.052632
rat0.051282
LOWER IN crohn's disease0.048780
LOWER IN ulcerative colitis0.047619
ulcerative colitis0.046512
LOWER IN clindamycin0.045455
LOWER IN ciprofloxacin0.045455
ciprofloxacin0.045455
crohn's disease0.045455
clindamycin0.045455
LOWER IN ampicillin0.043478
vancomycin0.043478
LOWER IN vancomycin0.042553
ampicillin0.042553
metronidazole0.041667
LOWER IN metronidazole0.040816
dog0.037037
canis lupus familiaris0.034483
mouse0.028777
mus musculus0.026144
research facility0.010329
LOWER IN control0.008929
control0.008734
united states of america0.006689
homo sapiens0.005155
feces0.004587
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN clindamycin0.500000
african elephant0.500000
LOWER IN ciprofloxacin0.500000
ciprofloxacin0.500000
ailurus fulgens0.500000
red panda0.500000
mustela putorius furo0.500000
ferret0.500000
clindamycin0.500000
loxodonta africana0.333333
panthera leo0.333333
lion0.333333
macaque0.250000
LOWER IN ampicillin0.250000
vancomycin0.250000
rabbit0.200000
state of tennessee0.200000
pan troglodytes0.200000
LOWER IN vancomycin0.200000
ampicillin0.200000
chimpanzee0.166667
metronidazole0.166667
gorilla gorilla0.142857
LOWER IN metronidazole0.142857
macaca mulatta0.125000
oryctolagus cuniculus0.111111
rattus norvegicus0.083333
sheep0.066667
ovis aries0.058824
sus scrofa0.058824
pig0.058824
zoological garden0.055556
LOWER IN antibiotic0.055556
rat0.055556
LOWER IN crohn's disease0.050000
antibiotic0.050000
LOWER IN ulcerative colitis0.047619
ulcerative colitis0.045455
crohn's disease0.043478
dog0.030303
canis lupus familiaris0.027027
mouse0.015152
mus musculus0.013699
research facility0.005236
LOWER IN control0.004587
control0.004484
united states of america0.003356
homo sapiens0.002625
feces0.002299
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
research facility0.380952
state of tennessee0.380952
zoological garden0.380952
mus musculus0.285714
mouse0.285714
control0.166667
LOWER IN control0.166667
homo sapiens0.142857
LOWER IN antibiotic0.119048
antibiotic0.119048
oryctolagus cuniculus0.047619
rabbit0.047619
ovis aries0.047619
sheep0.047619
pan troglodytes0.047619
chimpanzee0.047619
macaca mulatta0.047619
macaque0.047619
gorilla gorilla0.047619
LOWER IN crohn's disease0.047619
sus scrofa0.047619
pig0.047619
loxodonta africana0.047619
african elephant0.047619
rattus norvegicus0.047619
rat0.047619
LOWER IN ulcerative colitis0.047619
canis lupus familiaris0.047619
dog0.047619
panthera leo0.047619
lion0.047619
ulcerative colitis0.047619
crohn's disease0.047619
ailurus fulgens0.047619
red panda0.047619
mustela putorius furo0.047619
ferret0.047619
LOWER IN clindamycin0.023810
LOWER IN ampicillin0.023810
LOWER IN vancomycin0.023810
LOWER IN ciprofloxacin0.023810
LOWER IN metronidazole0.023810
ciprofloxacin0.023810
ampicillin0.023810
clindamycin0.023810
metronidazole0.023810
vancomycin0.023810
Number of experiments associating the term to the sequence
TermScore
feces1.000000
united states of america1.000000
research facility1.000000
oryctolagus cuniculus1.000000
rabbit1.000000
state of tennessee1.000000
zoological garden1.000000
ovis aries1.000000
sheep1.000000
pan troglodytes1.000000
chimpanzee1.000000
macaca mulatta1.000000
macaque1.000000
gorilla gorilla1.000000
control1.000000
LOWER IN antibiotic1.000000
LOWER IN clindamycin1.000000
mus musculus1.000000
mouse1.000000
LOWER IN crohn's disease1.000000
homo sapiens1.000000
sus scrofa1.000000
pig1.000000
LOWER IN ampicillin1.000000
loxodonta africana1.000000
african elephant1.000000
LOWER IN vancomycin1.000000
rattus norvegicus1.000000
rat1.000000
LOWER IN ulcerative colitis1.000000
LOWER IN ciprofloxacin1.000000
LOWER IN metronidazole1.000000
canis lupus familiaris1.000000
dog1.000000
panthera leo1.000000
lion1.000000
ciprofloxacin1.000000
antibiotic1.000000
LOWER IN control1.000000
ulcerative colitis1.000000
crohn's disease1.000000
ailurus fulgens1.000000
red panda1.000000
mustela putorius furo1.000000
ferret1.000000
ampicillin1.000000
clindamycin1.000000
metronidazole1.000000
vancomycin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
399amnon high in crohn's disease compared to ulcerative colitis in feces homo sapiens united states of america 2018-11-16v41 / 3approvedNo
399amnonhigher in clindamycin treated mice compared to controls ( high in antibiotic clindamycin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 5approvedNo
399amnonhigher in metronidazole treated mice compared to controls ( high in antibiotic metronidazole compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 5approvedNo
399amnonhigher in vancomycin treated mice compared to controls ( high in antibiotic vancomycin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 5approvedNo
399amnonhigher in ampicillin treated mice compared to controls ( high in antibiotic ampicillin compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 8approvedNo
399amnondominant feces, united states of america, mustela putorius furo, ferret2018-11-16v41 / 9approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, ailurus fulgens, red panda2018-11-16v41 / 9approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, gorilla gorilla2018-11-16v41 / 11approvedNo
399amnondominant feces, united states of america, research facility, mus musculus, mouse2018-11-18v41 / 12approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, sus scrofa, pig2018-11-16v41 / 13approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, ovis aries, sheep2018-11-16v41 / 13approvedNo
399amnondominant feces, united states of america, research facility, oryctolagus cuniculus, rabbit2018-11-16v41 / 14approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, pan troglodytes, chimpanzee2018-11-16v41 / 16approvedNo
399amnondominant feces, united states of america, canis lupus familiaris, dog2018-11-16v41 / 20approvedNo
399amnoncommon feces, united states of america, mustela putorius furo, ferret2018-11-16v41 / 20approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, macaca mulatta, macaque2018-11-16v41 / 21approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, ailurus fulgens, red panda2018-11-16v41 / 22approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, panthera leo, lion2018-11-16v41 / 23approvedNo
399amnondominant feces, united states of america, research facility, rattus norvegicus, rat2018-11-16v41 / 27approvedNo
399amnon high in crohn's disease compared to control in feces homo sapiens united states of america 2018-11-16v41 / 27approvedNo
399amnondominant feces, united states of america, state of tennessee, zoological garden, loxodonta africana, african elephant2018-11-16v41 / 28approvedNo
399amnon high in ulcerative colitis compared to control in feces homo sapiens united states of america 2018-11-16v41 / 36approvedNo
399amnon high in ulcerative colitis compared to crohn's disease in feces homo sapiens united states of america 2018-11-16v41 / 47approvedNo
399amnonhigher in ciprofloxacin treated mice compared to controls ( high in ciprofloxacin antibiotic compared to control in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 60approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, panthera leo, lion2018-11-16v41 / 79approvedNo
399amnoncommon feces, united states of america, research facility, mus musculus, mouse2018-11-18v41 / 89approvedNo
399amnoncommon feces, united states of america, canis lupus familiaris, dog2018-11-16v41 / 108approvedNo
399amnonlower in metronidazole treated mice compared to controls ( high in control compared to antibiotic metronidazole in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 127approvedNo
399amnonlower in ciprofloxacin treated mice compared to controls ( high in control compared to ciprofloxacin antibiotic in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 136approvedNo
399amnon high in control compared to ulcerative colitis in feces homo sapiens united states of america 2018-11-16v41 / 180approvedNo
399amnoncommon feces, united states of america, research facility, rattus norvegicus, rat2018-11-16v41 / 184approvedNo
399amnonlower in vancomycin treated mice compared to controls ( high in control compared to antibiotic vancomycin in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 225approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, loxodonta africana, african elephant2018-11-16v41 / 252approvedNo
399amnonlower in ampicillin treated mice compared to controls ( high in control compared to antibiotic ampicillin in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 263approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, sus scrofa, pig2018-11-16v41 / 319approvedNo
399amnon high in control compared to crohn's disease in feces homo sapiens united states of america 2018-11-16v41 / 390approvedNo
399amnonlower in clindamycin treated mice compared to controls ( high in control compared to antibiotic clindamycin in feces united states of america research facility mus musculus mouse )2018-11-18v41 / 394approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, gorilla gorilla2018-11-16v41 / 395approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, macaca mulatta, macaque2018-11-16v41 / 404approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, pan troglodytes, chimpanzee2018-11-16v41 / 407approvedNo
399amnoncommon feces, united states of america, state of tennessee, zoological garden, ovis aries, sheep2018-11-16v41 / 451approvedNo
399amnoncommon feces, united states of america, research facility, oryctolagus cuniculus, rabbit2018-11-16v41 / 577approvedNo

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