dbBact

Experiment ID: 410

Field	Description
name	compositional and temporal changes in the gut microbiome of pediatric ulcerative colitis patients are linked to disease course
sra	prjna436359
datamd5	24f95e8c7cd67f37f1251c22d179490e
mapmd5	fd2b4f7d06cf59a51bf0b935ab211181

Annotations for experiment:

term enrichment score

Term	Score
mild	0.400000
LOWER IN severe	0.400000
severe	0.400000
LOWER IN mild	0.400000
biopsy site	0.333333
LOWER IN biopsy site	0.200000
LOWER IN biopsy	0.200000
biopsy	0.181818
LOWER IN rectum	0.153846
rectum	0.142857
ulcerative colitis	0.088889
LOWER IN ulcerative colitis	0.086957
LOWER IN feces	0.055556
child	0.033333
united states of america	0.006689
homo sapiens	0.005291
feces	0.004608

Fraction of dbbact annotations with this term covered by the query

Term	Score
mild	0.500000
LOWER IN severe	0.500000
severe	0.500000
LOWER IN mild	0.500000
LOWER IN biopsy site	0.250000
LOWER IN biopsy	0.250000
biopsy site	0.250000
LOWER IN rectum	0.142857
biopsy	0.111111
rectum	0.083333
LOWER IN ulcerative colitis	0.050000
ulcerative colitis	0.047619
LOWER IN feces	0.033333
child	0.016949
united states of america	0.003356
homo sapiens	0.002653
feces	0.002315

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
united states of america	1.000000
child	1.000000
ulcerative colitis	0.666667
feces	0.500000
rectum	0.500000
biopsy site	0.500000
biopsy	0.500000
mild	0.333333
LOWER IN severe	0.333333
LOWER IN ulcerative colitis	0.333333
severe	0.333333
LOWER IN mild	0.333333
LOWER IN rectum	0.166667
LOWER IN biopsy site	0.166667
LOWER IN biopsy	0.166667
LOWER IN feces	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
LOWER IN rectum	1.000000
LOWER IN biopsy site	1.000000
LOWER IN biopsy	1.000000
homo sapiens	1.000000
united states of america	1.000000
child	1.000000
ulcerative colitis	1.000000
rectum	1.000000
biopsy site	1.000000
biopsy	1.000000
LOWER IN feces	1.000000
mild	1.000000
LOWER IN severe	1.000000
LOWER IN ulcerative colitis	1.000000
severe	1.000000
LOWER IN mild	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
410	amnon	higher in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in homo sapiens united states of america rectum biopsy site child biopsy )	2018-11-22	v4	1 / 5	approved	No
410	amnon	lower in severe treatment naive ulcerative colitis patients compared to mild ( high in severe ulcerative colitis compared to mild in feces homo sapiens united states of america child )	2018-11-22	v4	1 / 18	approved	No
410	amnon	lower in biopsies of severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in homo sapiens united states of america rectum biopsy site child biopsy )	2018-11-22	v4	1 / 26	approved	No
410	amnon	lower in severe treatment naive ulcerative colitis patients compared to mild ( high in mild compared to severe ulcerative colitis in feces homo sapiens united states of america child )	2018-11-22	v4	1 / 110	approved	No
410	amnon	lower in feces compared to rectal biopsies in children with treatment naive uc ( high in rectum biopsy site biopsy compared to feces in homo sapiens united states of america child ulcerative colitis )	2018-11-22	v4	1 / 118	approved	No
410	amnon	higher in feces compared to rectal biopsies in children with treatment naive uc ( high in feces compared to rectum biopsy site biopsy in homo sapiens united states of america child ulcerative colitis )	2018-11-22	v4	1 / 126	approved	No

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