Experiment ID: 435

Field Description
namemarginal zinc deficiency and environmentally relevant concentrations of arsenic elicit combined effects on the gut microbiome
sraprjna473851
datamd55af06a1006766222dc895bc6dfe539e3
mapmd5241a1f70f90eb1f97f872503ae891b74

Annotations for experiment:

term enrichment score
TermScore
age 9 weeks0.434783
state of oregon0.250000
age 4 weeks0.230769
LOWER IN age 9 weeks0.200000
LOWER IN zinc deficiency0.200000
LOWER IN low zinc diet0.200000
zinc deficiency0.200000
low zinc diet0.200000
LOWER IN age 4 weeks0.181818
c57bl/60.080000
mouse0.029851
mus musculus0.027027
female0.025641
research facility0.010695
LOWER IN control0.009174
control0.008969
united states of america0.006826
feces0.004739
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN age 9 weeks0.500000
LOWER IN zinc deficiency0.500000
LOWER IN low zinc diet0.500000
zinc deficiency0.500000
low zinc diet0.500000
age 9 weeks0.333333
LOWER IN age 4 weeks0.333333
age 4 weeks0.166667
state of oregon0.142857
c57bl/60.041667
mouse0.015152
mus musculus0.013699
female0.012987
research facility0.005376
LOWER IN control0.004762
control0.004651
united states of america0.003425
feces0.002375
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
c57bl/61.000000
state of oregon1.000000
mouse1.000000
age 9 weeks0.625000
age 4 weeks0.375000
LOWER IN age 4 weeks0.125000
LOWER IN age 9 weeks0.125000
control0.125000
LOWER IN zinc deficiency0.125000
LOWER IN low zinc diet0.125000
zinc deficiency0.125000
low zinc diet0.125000
LOWER IN control0.125000
Number of experiments associating the term to the sequence
TermScore
age 9 weeks1.000000
LOWER IN age 4 weeks1.000000
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
c57bl/61.000000
state of oregon1.000000
mouse1.000000
age 4 weeks1.000000
LOWER IN age 9 weeks1.000000
control1.000000
LOWER IN zinc deficiency1.000000
LOWER IN low zinc diet1.000000
zinc deficiency1.000000
low zinc diet1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
435amnondominant feces, united states of america, female, research facility, mus musculus, c57bl/6, state of oregon, mouse, age 4 weeks2018-12-23v41 / 7approvedNo
435amnondominant feces, united states of america, female, research facility, mus musculus, c57bl/6, state of oregon, mouse, age 9 weeks2018-12-23v41 / 7approvedNo
435amnon high in zinc deficiency low zinc diet compared to control in feces united states of america female research facility mus musculus c57bl/6 state of oregon mouse age 9 weeks 2018-12-23v41 / 7approvedNo
435amnon high in control compared to zinc deficiency low zinc diet in feces united states of america female research facility mus musculus c57bl/6 state of oregon mouse age 9 weeks 2018-12-23v41 / 8approvedNo
435amnoncommon feces, united states of america, female, research facility, mus musculus, c57bl/6, state of oregon, mouse, age 4 weeks2018-12-23v41 / 15approvedNo
435amnonlower in mice at end of experiment compared to initial sample ( high in age 4 weeks compared to age 9 weeks in feces united states of america female research facility mus musculus c57bl/6 state of oregon mouse )2018-12-23v41 / 23approvedNo
435amnoncommon feces, united states of america, female, research facility, mus musculus, c57bl/6, state of oregon, mouse, age 9 weeks2018-12-23v41 / 30approvedNo
435amnonhigher in mice at end of experiment compared to initial sample ( high in age 9 weeks compared to age 4 weeks in feces united states of america female research facility mus musculus c57bl/6 state of oregon mouse )2018-12-23v41 / 73approvedNo

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