Experiment ID: 458

Field Description
nameeffects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
sraprjna263829
datamd51ff84013a53585330d61066d98e8699f
mapmd5ca61227fae9a4a2c6b200dd849b5602d

Annotations for experiment:

term enrichment score
TermScore
harlan sprague dawley0.300000
LOWER IN a/j0.300000
a/j0.300000
LOWER IN balb/c0.260870
LOWER IN c57bl/60.206897
jackson laboratories0.157895
balb/c0.146341
LOWER IN harlan spague dawley0.125000
age 24 weeks0.125000
LOWER IN age 24 weeks0.125000
LOWER IN jackson laboratories0.111111
LOWER IN age 3 weeks0.111111
age 3 weeks0.105263
LOWER IN age0.095238
c57bl/60.069767
age0.057143
mouse0.029851
mus musculus0.027027
female0.025641
research facility0.010695
united states of america0.006826
feces0.004739
Fraction of dbbact annotations with this term covered by the query
TermScore
harlan sprague dawley0.500000
LOWER IN a/j0.500000
a/j0.500000
LOWER IN harlan spague dawley0.500000
age 24 weeks0.500000
LOWER IN age 24 weeks0.500000
LOWER IN balb/c0.333333
LOWER IN jackson laboratories0.250000
LOWER IN age 3 weeks0.250000
LOWER IN c57bl/60.200000
age 3 weeks0.200000
LOWER IN age0.142857
jackson laboratories0.125000
balb/c0.111111
age0.047619
c57bl/60.041667
mouse0.015152
mus musculus0.013699
female0.012987
research facility0.005376
united states of america0.003425
feces0.002375
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
harlan sprague dawley0.214286
c57bl/60.214286
LOWER IN balb/c0.214286
LOWER IN a/j0.214286
balb/c0.214286
a/j0.214286
LOWER IN c57bl/60.214286
jackson laboratories0.214286
LOWER IN jackson laboratories0.071429
LOWER IN harlan spague dawley0.071429
age0.071429
age 24 weeks0.071429
LOWER IN age 3 weeks0.071429
age 3 weeks0.071429
LOWER IN age0.071429
LOWER IN age 24 weeks0.071429
Number of experiments associating the term to the sequence
TermScore
harlan sprague dawley1.000000
LOWER IN jackson laboratories1.000000
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
c57bl/61.000000
LOWER IN balb/c1.000000
LOWER IN a/j1.000000
balb/c1.000000
a/j1.000000
LOWER IN c57bl/61.000000
jackson laboratories1.000000
LOWER IN harlan spague dawley1.000000
age1.000000
age 24 weeks1.000000
LOWER IN age 3 weeks1.000000
age 3 weeks1.000000
LOWER IN age1.000000
LOWER IN age 24 weeks1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
458amnonhigh freq. in mice strains from jackson laboratories (dominant feces, united states of america, female, research facility, mus musculus, mouse, jackson laboratories)2019-01-11v41 / 14approvedNo
458amnonhigh freq. in mice strains from harlan sprague dawley (dominant feces, united states of america, female, research facility, mus musculus, mouse, harlan sprague dawley)2019-01-11v41 / 21approvedNo
458amnonnegatively correlated with age ( high in age 3 weeks compared to age age 24 weeks in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 31approvedNo
458amnonpositively correlated with age ( high in age age 24 weeks compared to age 3 weeks in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 99approvedNo
458amnoncommon in mice strains from jackson laboratories (common feces, united states of america, female, research facility, mus musculus, mouse, jackson laboratories)2019-01-11v41 / 129approvedNo
458amnonhigher in BALB/c strain compared to A/J and C57BL/6 strains ( high in balb/c compared to a/j c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 147approvedNo
458amnoncommon in mice strains from harlan sprague dawley (common feces, united states of america, female, research facility, mus musculus, mouse, harlan sprague dawley)2019-01-11v41 / 184approvedNo
458amnonlower in BALB/c strain compared to A/J and C57BL/6 strains ( high in a/j c57bl/6 compared to balb/c in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 224approvedNo
458amnonlower in C57BL/6 strain compared to A/J and BALB/c strains ( high in balb/c a/j compared to c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 237approvedNo
458amnonlower in mice from hsd compared to jackson laboratories ( high in jackson laboratories compared to harlan spague dawley in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 267approvedNo
458amnonhigh in A/J strain compared to BALB/c and C57BL/6 strains ( high in a/j compared to balb/c c57bl/6 in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 306approvedNo
458amnonlower in A/J strain compared to BALB/c and C57BL/6 strains ( high in balb/c c57bl/6 compared to a/j in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 379approvedNo
458amnonhigher in C57BL/6 strain compared to A/J and BALB/c strains ( high in c57bl/6 compared to balb/c a/j in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 380approvedNo
458amnonhigher in mice from hsd compared to jackson laboratories ( high in harlan sprague dawley compared to jackson laboratories in feces united states of america female research facility mus musculus mouse )2019-01-11v41 / 644approvedNo

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