dbBact

Experiment ID: 48

Field	Description
name	the developing hypopharyngeal microbiota in early life
sra	srp090592
datamd5	c018fe6f71baf03869da24c1ca91c778
mapmd5	82497675818bf2d8cf68cc3699b9c114

Annotations for experiment:

term enrichment score

Term	Score
hypopharynx	0.666667
LOWER IN age 1 week	0.222222
LOWER IN 1-month-old human stage	0.200000
age 1 week	0.200000
LOWER IN 3-month-old human stage	0.200000
3-month-old human stage	0.181818
kingdom of denmark	0.166667
1-month-old human stage	0.166667
age	0.086957
infant	0.052632
homo sapiens	0.005291

Fraction of dbbact annotations with this term covered by the query

Term	Score
hypopharynx	0.500000
LOWER IN age 1 week	0.200000
LOWER IN 1-month-old human stage	0.166667
age 1 week	0.166667
LOWER IN 3-month-old human stage	0.166667
3-month-old human stage	0.142857
1-month-old human stage	0.125000
kingdom of denmark	0.090909
age	0.047619
infant	0.027027
homo sapiens	0.002653

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
hypopharynx	1.000000
infant	1.000000
kingdom of denmark	1.000000
age	0.500000
3-month-old human stage	0.250000
LOWER IN age 1 week	0.250000
LOWER IN 1-month-old human stage	0.250000
age 1 week	0.250000
1-month-old human stage	0.250000
LOWER IN 3-month-old human stage	0.250000

Number of experiments associating the term to the sequence

Term	Score
age	1.000000
3-month-old human stage	1.000000
LOWER IN age 1 week	1.000000
LOWER IN 1-month-old human stage	1.000000
homo sapiens	1.000000
hypopharynx	1.000000
infant	1.000000
kingdom of denmark	1.000000
age 1 week	1.000000
1-month-old human stage	1.000000
LOWER IN 3-month-old human stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
48	amnon	dominant homo sapiens, hypopharynx, infant, kingdom of denmark	2017-01-19	v4	1 / 13	approved	No
48	amnon	common homo sapiens, hypopharynx, infant, kingdom of denmark	2017-01-19	v4	1 / 15	approved	No
48	amnon	lower in 3 months compared to 1 week in infant hypopharynx ( high in age age 1 week 1-month-old human stage compared to 3-month-old human stage in homo sapiens hypopharynx infant kingdom of denmark )	2017-01-19	v4	1 / 35	approved	No
48	amnon	higher in 3 months compared to 1 week in infant hypopharynx ( high in age 3-month-old human stage compared to age 1 week 1-month-old human stage in homo sapiens hypopharynx infant kingdom of denmark )	2017-01-19	v4	1 / 116	approved	No

Problems / suggestions? Please visit the dbBact forum