dbBact

Experiment ID: 528

Field	Description
name	racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
sra	prjna326441
datamd5	79934adc795c461b5fed0546476652d6
mapmd5	ab5695ea430ebafb56751c572e64cd79

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN african	0.333333
african	0.333333
LOWER IN african american	0.250000
african american	0.222222
LOWER IN caucasian	0.222222
caucasian	0.200000
pregnancy	0.125000
vagina	0.125000
female	0.025000
united states of america	0.006689
homo sapiens	0.005291

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN african	0.500000
african	0.500000
LOWER IN african american	0.250000
african american	0.200000
LOWER IN caucasian	0.200000
caucasian	0.166667
pregnancy	0.066667
vagina	0.066667
female	0.012658
united states of america	0.003356
homo sapiens	0.002653

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
united states of america	1.000000
female	1.000000
pregnancy	1.000000
vagina	1.000000
caucasian	0.250000
LOWER IN african american	0.250000
LOWER IN african	0.250000
african american	0.250000
african	0.250000
LOWER IN caucasian	0.250000

Number of experiments associating the term to the sequence

Term	Score
caucasian	1.000000
LOWER IN african american	1.000000
LOWER IN african	1.000000
homo sapiens	1.000000
united states of america	1.000000
female	1.000000
pregnancy	1.000000
vagina	1.000000
african american	1.000000
african	1.000000
LOWER IN caucasian	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
528	amnon	common homo sapiens, united states of america, female, pregnancy, vagina	2019-07-14	v1	1 / 5	approved	No
528	amnon	dominant homo sapiens, united states of america, female, pregnancy, vagina	2019-07-14	v1	1 / 16	approved	No
528	amnon	high in african american african compared to caucasian in homo sapiens united states of america female pregnancy vagina	2019-07-14	v1	1 / 34	approved	No
528	amnon	high in caucasian compared to african american african in homo sapiens united states of america female pregnancy vagina	2019-07-14	v1	1 / 38	approved	No

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