Experiment ID: 535

Field Description
namedeciphering the complex interplay between microbiota, hpv, inflammation and cancer through cervicovaginal metabolic profiling
sraprjna518153
doihttps://doi.org/10.1016/j.ebiom.2019.04.028
datamd5664052bd3b6160d437317463fda9869e
mapmd514ecb5f6aca60ae26937360b66313a71

Annotations for experiment:

term enrichment score
TermScore
phoenix0.666667
dysplasia of cervix0.428571
state of arizona0.333333
cervical carcinoma0.333333
invasive carcinoma0.333333
invasive cervical carcinoma0.333333
LOWER IN dysplasia of cervix0.200000
vagina0.125000
female0.025641
control0.009188
LOWER IN control0.009174
adult0.008621
united states of america0.006803
homo sapiens0.005510
Fraction of dbbact annotations with this term covered by the query
TermScore
cervical carcinoma0.500000
phoenix0.500000
invasive carcinoma0.500000
invasive cervical carcinoma0.500000
dysplasia of cervix0.500000
LOWER IN dysplasia of cervix0.500000
state of arizona0.200000
vagina0.066667
female0.012987
LOWER IN control0.004762
control0.004651
adult0.004329
united states of america0.003413
homo sapiens0.002762
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
united states of america1.000000
female1.000000
vagina1.000000
adult1.000000
state of arizona1.000000
phoenix1.000000
dysplasia of cervix0.375000
control0.375000
cervical carcinoma0.250000
invasive carcinoma0.250000
invasive cervical carcinoma0.250000
LOWER IN dysplasia of cervix0.125000
LOWER IN control0.125000
Number of experiments associating the term to the sequence
TermScore
homo sapiens1.000000
united states of america1.000000
female1.000000
vagina1.000000
cervical carcinoma1.000000
adult1.000000
state of arizona1.000000
phoenix1.000000
invasive carcinoma1.000000
invasive cervical carcinoma1.000000
dysplasia of cervix1.000000
control1.000000
LOWER IN dysplasia of cervix1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
535amnoncommon in healthy adult vaginal samples (common homo sapiens, control, united states of america, female, vagina, adult, state of arizona, phoenix)2019-07-25v41 / 7approvedNo
535amnon high in dysplasia of cervix compared to control in homo sapiens united states of america female vagina adult state of arizona phoenix 2019-07-25v41 / 9approvedNo
535amnonhigh freq. in healthy adult vaginal samples (dominant homo sapiens, control, united states of america, female, vagina, adult, state of arizona, phoenix)2019-07-25v41 / 11approvedNo
535amnoncommon in adult vaginal samples with ICC (common homo sapiens, united states of america, female, vagina, cervical carcinoma, adult, state of arizona, phoenix, invasive carcinoma, invasive cervical carcinoma)2019-07-25v41 / 11approvedNo
535amnonhcommon in adult vaginal samples with cervical dysplasia (common homo sapiens, united states of america, female, vagina, adult, state of arizona, phoenix, dysplasia of cervix)2019-07-25v41 / 11approvedNo
535amnonhigh freq. in adult vaginal samples with cervical dysplasia (dominant homo sapiens, united states of america, female, vagina, adult, state of arizona, phoenix, dysplasia of cervix)2019-07-25v41 / 16approvedNo
535amnon high in control compared to dysplasia of cervix in homo sapiens united states of america female vagina adult state of arizona phoenix 2019-07-25v41 / 16approvedNo
535amnonhigh freq. in adult vaginal samples with ICC (dominant homo sapiens, united states of america, female, vagina, cervical carcinoma, adult, state of arizona, phoenix, invasive carcinoma, invasive cervical carcinoma)2019-07-25v41 / 20approvedNo

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