Experiment ID: 537

Field Description
nameeffects of the captive and wild environment on diversity of the gut microbiome of deer mice (peromyscus maniculatus)
srasrp140555
doihttps://doi.org/10.1038/s41396-019-0345-8
datamd5de661bf0dfeef0c7071de09cb830880d
mapmd5b58d1c46b3edc48865d609e0f0fbecb0

Annotations for experiment:

term enrichment score
TermScore
peromyscus maniculatus0.666667
deer mice0.666667
algonquin provincial park0.500000
age 3-5 weeks0.500000
province of ontario0.285714
LOWER IN research facility0.153846
LOWER IN captive0.142857
LOWER IN wild0.100000
canada0.062500
captive0.060606
wild0.052632
research facility0.010638
feces0.004751
Fraction of dbbact annotations with this term covered by the query
TermScore
peromyscus maniculatus0.500000
deer mice0.500000
algonquin provincial park0.333333
age 3-5 weeks0.333333
province of ontario0.166667
LOWER IN research facility0.142857
LOWER IN captive0.125000
LOWER IN wild0.071429
canada0.032258
captive0.032258
wild0.027778
research facility0.005376
feces0.002381
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
canada1.000000
province of ontario1.000000
algonquin provincial park1.000000
peromyscus maniculatus1.000000
deer mice1.000000
age 3-5 weeks1.000000
wild0.500000
research facility0.500000
captive0.500000
LOWER IN research facility0.166667
LOWER IN captive0.166667
LOWER IN wild0.166667
Number of experiments associating the term to the sequence
TermScore
wild1.000000
LOWER IN research facility1.000000
LOWER IN captive1.000000
feces1.000000
canada1.000000
province of ontario1.000000
algonquin provincial park1.000000
peromyscus maniculatus1.000000
deer mice1.000000
age 3-5 weeks1.000000
research facility1.000000
captive1.000000
LOWER IN wild1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
537amnonhigh freq. in feces of wild caught deer mice feces (dominant feces, canada, province of ontario, algonquin provincial park, peromyscus maniculatus, deer mice, age 3-5 weeks, wild)2019-07-28v31 / 10approvedNo
537amnonhigh freq. in feces of captive grown deer mice feces (dominant feces, research facility, canada, province of ontario, algonquin provincial park, captive, peromyscus maniculatus, deer mice, age 3-5 weeks)2019-07-28v31 / 19approvedNo
537amnonhigher in feces of deer mice grown in captivity compared to wild caught ( high in research facility captive compared to wild in feces canada province of ontario algonquin provincial park peromyscus maniculatus deer mice age 3-5 weeks )2019-07-28v31 / 96approvedNo
537amnoncommon in feces of captive grown deer mice feces (common feces, research facility, canada, province of ontario, algonquin provincial park, captive, peromyscus maniculatus, deer mice, age 3-5 weeks)2019-07-28v31 / 121approvedNo
537amnoncommon in feces of wild caught deer mice feces (common feces, canada, province of ontario, algonquin provincial park, peromyscus maniculatus, deer mice, age 3-5 weeks, wild)2019-07-28v31 / 163approvedNo
537amnonlower in feces of deer mice grown in captivity compared to wild caught ( high in wild compared to research facility captive in feces canada province of ontario algonquin provincial park peromyscus maniculatus deer mice age 3-5 weeks )2019-07-28v31 / 358approvedNo

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