Experiment ID: 538

Field Description
namecomparison of co-housing and littermate methods for microbiota standardization in mouse models
sraprjeb28381
doihttps://doi.org/10.1016/j.celrep.2019.04.023
datamd537e52a790ce7fac2243c5614981bb576
mapmd526b482786bf15e45433bc9f62e160e5a

Annotations for experiment:

term enrichment score
TermScore
age 8 weeks0.400000
taconic farms0.333333
terminal ileum0.275862
right colon0.242424
jackson laboratories0.222222
LOWER IN taconic farms0.171429
LOWER IN jackson laboratories0.157895
LOWER IN terminal ileum0.133333
LOWER IN right colon0.111111
ileum0.089888
c57bl/60.080000
colon0.076190
LOWER IN ileum0.071429
LOWER IN colon0.064516
canada0.062500
LOWER IN feces0.056338
mouse0.030303
mus musculus0.027397
research facility0.010753
feces0.004766
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN terminal ileum0.500000
LOWER IN taconic farms0.333333
age 8 weeks0.250000
terminal ileum0.250000
taconic farms0.250000
LOWER IN jackson laboratories0.250000
right colon0.200000
LOWER IN right colon0.200000
jackson laboratories0.142857
LOWER IN ileum0.066667
LOWER IN colon0.055556
ileum0.052632
colon0.043478
c57bl/60.041667
LOWER IN feces0.034483
canada0.032258
mouse0.015385
mus musculus0.013889
research facility0.005405
feces0.002398
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
mus musculus1.000000
c57bl/61.000000
canada1.000000
mouse1.000000
age 8 weeks1.000000
jackson laboratories0.500000
taconic farms0.500000
feces0.384615
colon0.307692
right colon0.307692
ileum0.307692
terminal ileum0.307692
LOWER IN feces0.153846
LOWER IN taconic farms0.115385
LOWER IN jackson laboratories0.115385
LOWER IN colon0.076923
LOWER IN right colon0.076923
LOWER IN ileum0.076923
LOWER IN terminal ileum0.076923
Number of experiments associating the term to the sequence
TermScore
research facility1.000000
colon1.000000
right colon1.000000
mus musculus1.000000
c57bl/61.000000
canada1.000000
mouse1.000000
jackson laboratories1.000000
age 8 weeks1.000000
ileum1.000000
terminal ileum1.000000
LOWER IN taconic farms1.000000
LOWER IN feces1.000000
taconic farms1.000000
LOWER IN jackson laboratories1.000000
feces1.000000
LOWER IN colon1.000000
LOWER IN right colon1.000000
LOWER IN ileum1.000000
LOWER IN terminal ileum1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
538amnondominant feces, research facility, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 11approvedNo
538amnondominant feces, research facility, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 12approvedNo
538amnondominant research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 17approvedNo
538amnondominant research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 18approvedNo
538amnondominant research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 18approvedNo
538amnondominant research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 22approvedNo
538amnon high in feces compared to colon right colon in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v41 / 22approvedNo
538amnon high in feces compared to ileum terminal ileum in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v41 / 23approvedNo
538amnon high in feces compared to ileum terminal ileum in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v41 / 25approvedNo
538amnon high in feces compared to colon right colon in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v41 / 27approvedNo
538amnon high in ileum terminal ileum compared to feces in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v41 / 41approvedNo
538amnon high in colon right colon compared to feces in research facility mus musculus c57bl/6 canada mouse taconic farms age 8 weeks 2019-07-29v41 / 51approvedNo
538amnon high in taconic farms compared to jackson laboratories in research facility ileum mus musculus c57bl/6 terminal ileum canada mouse age 8 weeks 2019-07-29v41 / 104approvedNo
538amnon high in taconic farms compared to jackson laboratories in research facility colon right colon mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v41 / 108approvedNo
538amnoncommon feces, research facility, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 108approvedNo
538amnon high in jackson laboratories compared to taconic farms in feces research facility mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v41 / 110approvedNo
538amnon high in ileum terminal ileum compared to feces in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v41 / 119approvedNo
538amnoncommon feces, research facility, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 120approvedNo
538amnoncommon research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 130approvedNo
538amnoncommon research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, taconic farms, age 8 weeks2019-07-30v41 / 132approvedNo
538amnon high in taconic farms compared to jackson laboratories in feces research facility mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v41 / 135approvedNo
538amnon high in colon right colon compared to feces in research facility mus musculus c57bl/6 canada mouse jackson laboratories age 8 weeks 2019-07-29v41 / 140approvedNo
538amnon high in jackson laboratories compared to taconic farms in research facility ileum mus musculus c57bl/6 terminal ileum canada mouse age 8 weeks 2019-07-29v41 / 154approvedNo
538amnon high in jackson laboratories compared to taconic farms in research facility colon right colon mus musculus c57bl/6 canada mouse age 8 weeks 2019-07-29v41 / 172approvedNo
538amnoncommon research facility, ileum, mus musculus, c57bl/6, terminal ileum, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 182approvedNo
538amnoncommon research facility, colon, right colon, mus musculus, c57bl/6, canada, mouse, jackson laboratories, age 8 weeks2019-07-30v41 / 186approvedNo

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