dbBact

Experiment ID: 552

Field	Description
name	bacterial but not fungal gut microbiota alterations are associated with common variable immunodeficiency (cvid) phenotype
sra	prjeb32265
doi	https://doi.org/10.3389/fimmu.2019.01914
datamd5	1074213cef2853dcf73a8f7e939d671a
mapmd5	16d81b22f09248c2860a41dfb506e18b

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN common variable immunodeficiency	0.333333
common variable immunodeficiency	0.333333
czech republic	0.181818
LOWER IN control	0.009132
control	0.008929
homo sapiens	0.005319
feces	0.004640

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN common variable immunodeficiency	0.500000
common variable immunodeficiency	0.500000
czech republic	0.100000
LOWER IN control	0.004651
control	0.004545
homo sapiens	0.002667
feces	0.002326

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
czech republic	1.000000
control	0.250000
LOWER IN common variable immunodeficiency	0.250000
common variable immunodeficiency	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
czech republic	1.000000
control	1.000000
LOWER IN common variable immunodeficiency	1.000000
common variable immunodeficiency	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
552	amnon	high in common variable immunodeficiency compared to control in feces homo sapiens czech republic	2019-09-05	v3	1 / 8	approved	No
552	amnon	high in control compared to common variable immunodeficiency in feces homo sapiens czech republic	2019-09-05	v3	1 / 10	approved	No
552	amnon	dominant feces, homo sapiens, czech republic	2019-09-05	v3	1 / 22	approved	No
552	amnon	common feces, homo sapiens, czech republic	2019-09-05	v3	1 / 70	approved	No

Problems / suggestions? Please visit the dbBact forum