dbBact

Experiment ID: 559

Field	Description
name	reduced gut microbiome diversity and metabolome differences in rhinoceros species at risk for iron overload disorder
sra	prjna558964
doi	10.3389/fmicb.2019.02291
datamd5	9c8a89945830eccfba31f313966f214b
mapmd5	609d07dd1682ae8b306ffd6c0702ea56

Annotations for experiment:

term enrichment score

Term	Score
rhinoceros unicornis	0.315789
greater one-horned rhinoceros	0.315789
dicerorhinus sumatrensis	0.285714
sumatran rhinoceros	0.285714
diceros bicornis	0.250000
black rhinoceros	0.250000
ceratotherium simum	0.214286
white rhinoceros	0.214286
LOWER IN rhinoceros unicornis	0.153846
LOWER IN greater one-horned rhinoceros	0.153846
LOWER IN ceratotherium simum	0.153846
LOWER IN white rhinoceros	0.153846
zoological garden	0.105263
captive	0.060606
united states of america	0.006689
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
dicerorhinus sumatrensis	0.500000
sumatran rhinoceros	0.500000
rhinoceros unicornis	0.333333
greater one-horned rhinoceros	0.333333
LOWER IN rhinoceros unicornis	0.333333
LOWER IN greater one-horned rhinoceros	0.333333
diceros bicornis	0.333333
black rhinoceros	0.333333
LOWER IN ceratotherium simum	0.333333
LOWER IN white rhinoceros	0.333333
ceratotherium simum	0.166667
white rhinoceros	0.166667
zoological garden	0.055556
captive	0.031250
united states of america	0.003356
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
united states of america	1.000000
zoological garden	1.000000
captive	1.000000
ceratotherium simum	0.300000
white rhinoceros	0.300000
rhinoceros unicornis	0.300000
greater one-horned rhinoceros	0.300000
diceros bicornis	0.200000
black rhinoceros	0.200000
dicerorhinus sumatrensis	0.200000
sumatran rhinoceros	0.200000
LOWER IN rhinoceros unicornis	0.100000
LOWER IN greater one-horned rhinoceros	0.100000
LOWER IN ceratotherium simum	0.100000
LOWER IN white rhinoceros	0.100000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
united states of america	1.000000
zoological garden	1.000000
ceratotherium simum	1.000000
white rhinoceros	1.000000
captive	1.000000
rhinoceros unicornis	1.000000
greater one-horned rhinoceros	1.000000
LOWER IN rhinoceros unicornis	1.000000
LOWER IN greater one-horned rhinoceros	1.000000
diceros bicornis	1.000000
black rhinoceros	1.000000
dicerorhinus sumatrensis	1.000000
sumatran rhinoceros	1.000000
LOWER IN ceratotherium simum	1.000000
LOWER IN white rhinoceros	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
559	amnon	dominant feces, united states of america, zoological garden, diceros bicornis, black rhinoceros, captive	2019-11-03	v4	1 / 9	approved	No
559	amnon	dominant feces, united states of america, zoological garden, ceratotherium simum, white rhinoceros, captive	2019-11-03	v4	1 / 10	approved	No
559	amnon	dominant feces, united states of america, zoological garden, captive, rhinoceros unicornis, greater one-horned rhinoceros	2019-11-03	v4	1 / 12	approved	No
559	amnon	dominant feces, united states of america, zoological garden, captive, dicerorhinus sumatrensis, sumatran rhinoceros	2019-11-03	v4	1 / 15	approved	No
559	amnon	high in rhinoceros unicornis greater one-horned rhinoceros compared to ceratotherium simum white rhinoceros in feces united states of america zoological garden captive	2019-11-03	v4	1 / 249	approved	No
559	amnon	common feces, united states of america, zoological garden, captive, dicerorhinus sumatrensis, sumatran rhinoceros	2019-11-03	v4	1 / 267	approved	No
559	amnon	high in ceratotherium simum white rhinoceros compared to rhinoceros unicornis greater one-horned rhinoceros in feces united states of america zoological garden captive	2019-11-03	v4	1 / 382	approved	No
559	amnon	common feces, united states of america, zoological garden, diceros bicornis, black rhinoceros, captive	2019-11-03	v4	1 / 382	approved	No
559	amnon	common feces, united states of america, zoological garden, captive, rhinoceros unicornis, greater one-horned rhinoceros	2019-11-03	v4	1 / 582	approved	No
559	amnon	common feces, united states of america, zoological garden, ceratotherium simum, white rhinoceros, captive	2019-11-03	v4	1 / 652	approved	No

Problems / suggestions? Please visit the dbBact forum