dbBact

Experiment ID: 563

Field	Description
name	alterations to the gastrointestinal microbiome associated with methamphetamine use among young men who have sex with men
sra	prjna422134
doi	https://doi.org/10.1038/s41598-019-51142-8
datamd5	062d15efa40fa0bb67876cbf68f96cee
mapmd5	95d3473ce233acc821153401e546b1c1

Annotations for experiment:

term enrichment score

Term	Score
homosexual	0.222222
msm	0.222222
hiv infection	0.153846
LOWER IN hiv infection	0.133333
rectal swab	0.111111
male	0.039216
LOWER IN control	0.009050
control	0.009009
united states of america	0.006689
homo sapiens	0.005291
feces	0.004619

Fraction of dbbact annotations with this term covered by the query

Term	Score
homosexual	0.125000
msm	0.125000
LOWER IN hiv infection	0.111111
hiv infection	0.090909
rectal swab	0.058824
male	0.020000
LOWER IN control	0.004651
control	0.004545
united states of america	0.003356
homo sapiens	0.002653
feces	0.002315

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
united states of america	1.000000
homosexual	1.000000
msm	1.000000
male	1.000000
rectal swab	1.000000
hiv infection	0.500000
control	0.500000
LOWER IN control	0.166667
LOWER IN hiv infection	0.166667

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
united states of america	1.000000
hiv infection	1.000000
homosexual	1.000000
msm	1.000000
male	1.000000
rectal swab	1.000000
control	1.000000
LOWER IN control	1.000000
LOWER IN hiv infection	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
563	amnon	dominant feces, homo sapiens, control, united states of america, homosexual, msm, male, rectal swab	2019-11-18	v4	1 / 18	approved	No
563	amnon	dominant feces, homo sapiens, united states of america, hiv infection, homosexual, msm, male, rectal swab	2019-11-18	v4	1 / 20	approved	No
563	amnon	high in control compared to hiv infection in feces homo sapiens united states of america male homosexual msm rectal swab	2019-11-18	v4	1 / 58	approved	No
563	amnon	high in hiv infection compared to control in feces homo sapiens united states of america homosexual msm male rectal swab	2019-11-18	v4	1 / 100	approved	No
563	amnon	common feces, homo sapiens, control, united states of america, homosexual, msm, male, rectal swab	2019-11-18	v4	1 / 103	approved	No
563	amnon	common feces, homo sapiens, united states of america, hiv infection, homosexual, msm, male, rectal swab	2019-11-18	v4	1 / 111	approved	No

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