Experiment ID: 59

Field Description
namestrain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees
srasrp071118
datamd5da3f4d2151d8220006667f471908d7fd
mapmd53a82ebefdbe7074f8c440414c98f9b17

Annotations for experiment:

term enrichment score
TermScore
apis mellifera0.172414
trigona hyalinata0.108108
apis dorsata0.108108
trigona spinipes0.108108
centris atripes0.108108
sundatrigona moorei0.108108
geniotrigona thoracica0.108108
apis florea0.108108
apis andreniformis0.108108
apis cerana0.108108
heterotrigona itama0.108108
paratrigona lineata0.108108
tetragonula fuscobalteata0.108108
bombus bifarius0.108108
bombus pennsylvanicus0.102564
LOWER IN china0.097561
digestive system0.064451
austin0.057143
LOWER IN australia0.057143
LOWER IN malaysia0.057143
LOWER IN seoul0.057143
malaysia0.054054
seoul0.054054
state of texas0.046512
pathogen0.041667
australia0.031250
united states of america0.006504
Fraction of dbbact annotations with this term covered by the query
TermScore
trigona hyalinata0.500000
apis dorsata0.500000
trigona spinipes0.500000
austin0.500000
LOWER IN australia0.500000
LOWER IN malaysia0.500000
LOWER IN seoul0.500000
centris atripes0.500000
sundatrigona moorei0.500000
geniotrigona thoracica0.500000
apis florea0.500000
apis andreniformis0.500000
apis cerana0.500000
heterotrigona itama0.500000
paratrigona lineata0.500000
tetragonula fuscobalteata0.500000
bombus bifarius0.500000
bombus pennsylvanicus0.333333
LOWER IN china0.250000
malaysia0.250000
seoul0.250000
apis mellifera0.200000
state of texas0.100000
pathogen0.066667
digestive system0.033333
australia0.032258
united states of america0.003436
Fraction of annotations for the query sequences containing the term
TermScore
digestive system0.969697
apis mellifera0.151515
trigona hyalinata0.060606
apis dorsata0.060606
trigona spinipes0.060606
united states of america0.060606
LOWER IN china0.060606
centris atripes0.060606
sundatrigona moorei0.060606
geniotrigona thoracica0.060606
bombus pennsylvanicus0.060606
apis florea0.060606
apis andreniformis0.060606
apis cerana0.060606
heterotrigona itama0.060606
paratrigona lineata0.060606
tetragonula fuscobalteata0.060606
bombus bifarius0.060606
austin0.030303
LOWER IN australia0.030303
LOWER IN malaysia0.030303
LOWER IN seoul0.030303
pathogen0.030303
australia0.030303
state of texas0.030303
malaysia0.030303
seoul0.030303
Number of experiments associating the term to the sequence
TermScore
digestive system1.000000
trigona hyalinata1.000000
apis dorsata1.000000
trigona spinipes1.000000
united states of america1.000000
austin1.000000
LOWER IN australia1.000000
LOWER IN malaysia1.000000
LOWER IN seoul1.000000
LOWER IN china1.000000
apis mellifera1.000000
centris atripes1.000000
sundatrigona moorei1.000000
geniotrigona thoracica1.000000
bombus pennsylvanicus1.000000
apis florea1.000000
apis andreniformis1.000000
apis cerana1.000000
heterotrigona itama1.000000
paratrigona lineata1.000000
tetragonula fuscobalteata1.000000
bombus bifarius1.000000
pathogen1.000000
australia1.000000
state of texas1.000000
malaysia1.000000
seoul1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
59amnoncandidate pathogen (Melissococcus plutonius). Causes European Foulbrood of honeybees (other pathogen, apis mellifera)2017-02-02v41 / 1approvedNo
59amnon high in united states of america australia state of texas malaysia seoul compared to china in digestive system apis mellifera 2017-02-02v41 / 1approvedNo
59amnondominant digestive system, bombus bifarius2017-02-03v41 / 6approvedNo
59amnoncommon digestive system, bombus bifarius2017-02-03v41 / 6approvedNo
59amnondominant digestive system, tetragonula fuscobalteata2017-02-02v41 / 7approvedNo
59amnoncommon digestive system, tetragonula fuscobalteata2017-02-02v41 / 8approvedNo
59amnondominant digestive system, geniotrigona thoracica2017-02-03v41 / 9approvedNo
59amnoncommon digestive system, apis cerana2017-02-02v41 / 10approvedNo
59amnoncommon digestive system, paratrigona lineata2017-02-03v41 / 10approvedNo
59amnondominant digestive system, centris atripes2017-02-03v41 / 11approvedNo
59amnon high in compared to in digestive system bombus pennsylvanicus 2017-02-02v41 / 11approvedNo
59amnoncommon digestive system, heterotrigona itama2017-02-03v41 / 11approvedNo
59amnondominant digestive system, heterotrigona itama2017-02-03v41 / 12approvedNo
59amnondominant digestive system, paratrigona lineata2017-02-03v41 / 12approvedNo
59amnoncommon digestive system, apis andreniformis2017-02-02v41 / 13approvedNo
59amnondominant digestive system, apis cerana2017-02-02v41 / 13approvedNo
59amnondominant digestive system, trigona spinipes2017-02-03v41 / 13approvedNo
59amnondominant digestive system, sundatrigona moorei2017-02-03v41 / 13approvedNo
59amnondominant digestive system, apis florea2017-02-02v41 / 15approvedNo
59amnondominant digestive system, apis andreniformis2017-02-02v41 / 15approvedNo
59amnondominant digestive system, trigona hyalinata2017-02-02v41 / 15approvedNo
59amnoncommon digestive system, apis mellifera2017-02-02v41 / 16approvedNo
59amnoncommon digestive system, apis florea2017-02-02v41 / 16approvedNo
59amnoncommon digestive system, bombus pennsylvanicus2017-02-02v41 / 17approvedNo
59amnondominant digestive system, apis mellifera2017-02-02v41 / 18approvedNo
59amnondominant digestive system, apis dorsata2017-02-02v41 / 18approvedNo
59amnoncommon digestive system, geniotrigona thoracica2017-02-03v41 / 19approvedNo
59amnoncommon digestive system, centris atripes2017-02-03v41 / 20approvedNo
59amnoncommon digestive system, sundatrigona moorei2017-02-03v41 / 20approvedNo
59amnon high in united states of america austin compared to australia malaysia seoul china in digestive system apis mellifera 2017-02-02v41 / 25approvedNo
59amnoncommon digestive system, trigona spinipes2017-02-03v41 / 30approvedNo
59amnoncommon digestive system, apis dorsata2017-02-02v41 / 38approvedNo
59amnoncommon digestive system, trigona hyalinata2017-02-02v41 / 43approvedNo

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