Experiment ID: 605

Field Description
namea microbiome case-control study of recurrent acute otitis media identified potentially protective bacterial genera
srasrp108387
doihttps://doi.org/10.1186/s12866-018-1154-3
datamd5d8cb8b1931403cfacc353afcd49fbd79
mapmd5246fa786f8fb86dedf548c7cf130f4e2

Annotations for experiment:

term enrichment score
TermScore
perth0.622222
recurrent otitis media0.564103
age 1-3 years0.383562
middle ear0.342857
middle ear rinse0.260870
middle ear fluid0.260870
2-year-old human stage0.178344
ear canal0.160000
nasopharynx0.155844
external acoustic meatus0.148148
1-year-old human stage0.131455
LOWER IN recurrent otitis media0.105263
LOWER IN middle ear fluid0.105263
LOWER IN middle ear rinse0.105263
australia0.062500
child0.036223
control0.009063
LOWER IN control0.008811
Fraction of dbbact annotations with this term covered by the query
TermScore
recurrent otitis media0.500000
perth0.500000
LOWER IN recurrent otitis media0.500000
middle ear rinse0.500000
LOWER IN middle ear fluid0.500000
middle ear fluid0.500000
LOWER IN middle ear rinse0.500000
middle ear0.333333
age 1-3 years0.250000
ear canal0.250000
external acoustic meatus0.200000
nasopharynx0.100000
2-year-old human stage0.100000
1-year-old human stage0.071429
australia0.032258
child0.018519
LOWER IN control0.004762
control0.004651
Fraction of annotations for the query sequences containing the term
TermScore
australia1.000000
child0.823529
age 1-3 years0.823529
perth0.823529
2-year-old human stage0.823529
1-year-old human stage0.823529
recurrent otitis media0.647059
nasopharynx0.352941
middle ear0.352941
control0.176471
middle ear rinse0.176471
middle ear fluid0.176471
contamination0.176471
external acoustic meatus0.117647
ear canal0.117647
LOWER IN control0.058824
LOWER IN recurrent otitis media0.058824
LOWER IN middle ear fluid0.058824
LOWER IN middle ear rinse0.058824
Number of experiments associating the term to the sequence
TermScore
recurrent otitis media1.000000
LOWER IN control1.000000
nasopharynx1.000000
child1.000000
australia1.000000
age 1-3 years1.000000
perth1.000000
2-year-old human stage1.000000
1-year-old human stage1.000000
control1.000000
LOWER IN recurrent otitis media1.000000
middle ear rinse1.000000
LOWER IN middle ear fluid1.000000
middle ear1.000000
middle ear fluid1.000000
external acoustic meatus1.000000
ear canal1.000000
LOWER IN middle ear rinse1.000000
contamination1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v31 / 1approvedNo
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v31 / 1approvedNo
605amnoncandidate contaminant (high in negative controls) (contamination)2020-04-07v31 / 1approvedNo
605amnoncommon control, nasopharynx, child, australia, age 1-3 years, perth, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 6approvedNo
605amnoncommon middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear rinse, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 6approvedNo
605amnoncommon external acoustic meatus, child, australia, ear canal, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 7approvedNo
605amnoncommon middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear fluid, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 9approvedNo
605amnondominant control, nasopharynx, child, australia, age 1-3 years, perth, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 10approvedNo
605amnondominant middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear rinse, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 12approvedNo
605amnondominant middle ear, child, australia, age 1-3 years, perth, recurrent otitis media, middle ear fluid, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 13approvedNo
605amnondominant external acoustic meatus, child, australia, ear canal, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 13approvedNo
605amnon high in middle ear fluid compared to middle ear rinse in middle ear child australia age 1-3 years perth recurrent otitis media 2-year-old human stage 1-year-old human stage 2020-04-07v31 / 13approvedNo
605amnondominant nasopharynx, child, australia, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 14approvedNo
605amnoncommon nasopharynx, child, australia, age 1-3 years, perth, recurrent otitis media, 2-year-old human stage, 1-year-old human stage2020-04-07v31 / 14approvedNo
605amnon high in middle ear rinse compared to middle ear fluid in middle ear child australia age 1-3 years perth recurrent otitis media 2-year-old human stage 1-year-old human stage 2020-04-07v31 / 24approvedNo
605amnon high in control compared to recurrent otitis media in nasopharynx child australia age 1-3 years perth 2-year-old human stage 1-year-old human stage 2020-04-07v31 / 27approvedNo
605amnon high in recurrent otitis media compared to control in nasopharynx child australia age 1-3 years perth 2-year-old human stage 1-year-old human stage 2020-04-07v31 / 149approvedNo

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