dbBact

Experiment ID: 640

Field	Description
name	pregnancy-related ecological shifts of salivary microbiota and its association with salivary sex hormones
sra	srp113577
doi	https://doi.org/10.21203/rs.3.rs-54822/v1
datamd5	2985b3b1b47f83b753f0490af4f8f044
mapmd5	5808469a0c2d4ab7020c789953ec4511

Annotations for experiment:

term enrichment score

Term	Score
shanghai district	0.500000
LOWER IN supragingival dental plaque	0.142857
supragingival dental plaque	0.133333
LOWER IN supragingival plaque	0.125000
LOWER IN dentition	0.117647
supragingival plaque	0.111111
LOWER IN saliva	0.076923
dentition	0.074074
saliva	0.030303
female	0.025000
china	0.009569
adult	0.008333
homo sapiens	0.005319

Fraction of dbbact annotations with this term covered by the query

Term	Score
shanghai district	0.333333
LOWER IN supragingival dental plaque	0.125000
LOWER IN supragingival plaque	0.100000
LOWER IN dentition	0.090909
supragingival dental plaque	0.076923
supragingival plaque	0.062500
LOWER IN saliva	0.050000
dentition	0.040000
saliva	0.015625
female	0.012658
china	0.004808
adult	0.004184
homo sapiens	0.002667

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
female	1.000000
adult	1.000000
china	1.000000
shanghai district	1.000000
saliva	0.500000
dentition	0.500000
supragingival plaque	0.500000
supragingival dental plaque	0.500000
LOWER IN dentition	0.166667
LOWER IN supragingival plaque	0.166667
LOWER IN supragingival dental plaque	0.166667
LOWER IN saliva	0.166667

Number of experiments associating the term to the sequence

Term	Score
saliva	1.000000
LOWER IN dentition	1.000000
LOWER IN supragingival plaque	1.000000
LOWER IN supragingival dental plaque	1.000000
homo sapiens	1.000000
female	1.000000
adult	1.000000
china	1.000000
shanghai district	1.000000
dentition	1.000000
supragingival plaque	1.000000
supragingival dental plaque	1.000000
LOWER IN saliva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
640	amnon	dominant homo sapiens, female, saliva, adult, china, shanghai district	2020-08-22	v4	1 / 17	approved	No
640	amnon	dominant homo sapiens, female, dentition, adult, supragingival plaque, supragingival dental plaque, china, shanghai district	2020-08-22	v4	1 / 25	approved	No
640	amnon	high in dentition supragingival plaque supragingival dental plaque compared to saliva in homo sapiens female adult china shanghai district	2020-08-22	v4	1 / 47	approved	No
640	amnon	common homo sapiens, female, dentition, adult, supragingival plaque, supragingival dental plaque, china, shanghai district	2020-08-22	v4	1 / 65	approved	No
640	amnon	common homo sapiens, female, saliva, adult, china, shanghai district	2020-08-22	v4	1 / 117	approved	No
640	amnon	high in saliva compared to dentition supragingival plaque supragingival dental plaque in homo sapiens female adult china shanghai district	2020-08-22	v4	1 / 232	approved	No

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