Experiment ID: 642

Field Description
nametemporal, environmental, and biological drivers of the mucosal microbiome in a wild marine fish, scomber japonicus. msphere 5: e00401-20
sraprjeb27458
qiita11721
doihttps://doi.org/10.1128/msphere.00401-20
datamd5dd1ddfce0413e2c81dd88966df179169
mapmd5cd24b6575dffd5a2f3b8b3f7e20409d3

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN gastrointestinal system0.500000
LOWER IN alimentary part of gastrointestinal system0.500000
scomber japonicus0.500000
chub mackerel0.500000
LOWER IN epidermis0.500000
LOWER IN scomber japonicus0.500000
LOWER IN chub mackerel0.500000
actinopterygian pyloric caecum0.500000
alimentary part of gastrointestinal system0.333333
LOWER IN digesta0.333333
LOWER IN gill0.250000
LOWER IN saline water0.200000
san diego0.200000
gill0.200000
epidermis0.166667
digesta0.142857
gastrointestinal system0.142857
LOWER IN sediment0.142857
LOWER IN marine sediment0.142857
LOWER IN skin0.111111
LOWER IN water0.076923
saline water0.076923
LOWER IN sea water0.071429
fish0.062500
surface water0.058824
marine sediment0.052632
pacific ocean0.047619
LOWER IN winter season0.045455
winter season0.041667
summer season0.035714
LOWER IN summer season0.035714
sediment0.033333
LOWER IN feces0.033333
skin0.024390
sea water0.023256
water0.018182
feces0.002381
Fraction of annotations for the query sequences containing the term
TermScore
pacific ocean1.000000
san diego1.000000
scomber japonicus0.730769
chub mackerel0.730769
fish0.692308
gill0.230769
gastrointestinal system0.153846
alimentary part of gastrointestinal system0.153846
water0.153846
saline water0.153846
sea water0.153846
skin0.153846
sediment0.115385
marine sediment0.115385
feces0.115385
digesta0.115385
epidermis0.115385
LOWER IN water0.076923
LOWER IN saline water0.076923
LOWER IN sea water0.076923
LOWER IN gastrointestinal system0.076923
LOWER IN alimentary part of gastrointestinal system0.076923
LOWER IN skin0.076923
LOWER IN gill0.076923
actinopterygian pyloric caecum0.076923
surface water0.076923
LOWER IN epidermis0.038462
LOWER IN scomber japonicus0.038462
LOWER IN chub mackerel0.038462
summer season0.038462
LOWER IN winter season0.038462
LOWER IN sediment0.038462
LOWER IN marine sediment0.038462
winter season0.038462
LOWER IN summer season0.038462
LOWER IN feces0.038462
LOWER IN digesta0.038462
Exp. ID User ID Description Date Region Sequences Status Flag
642amnondominant sediment, marine sediment, pacific ocean, san diego2020-08-28v41 / 6approvedNo
642amnoncommon skin, pacific ocean, san diego, fish, epidermis, scomber japonicus, chub mackerel2020-08-28v41 / 6approvedNo
642amnoncommon gastrointestinal system, pacific ocean, san diego, fish, alimentary part of gastrointestinal system, scomber japonicus, chub mackerel2020-08-28v41 / 7approvedNo
642amnoncommon pacific ocean, san diego, fish, actinopterygian pyloric caecum, scomber japonicus, chub mackerel2020-08-28v41 / 7approvedNo
642amnondominant skin, pacific ocean, san diego, fish, epidermis, scomber japonicus, chub mackerel2020-08-28v41 / 8approvedNo
642amnoncommon water, saline water, surface water, sea water, pacific ocean, san diego2020-08-28v41 / 10approvedNo
642amnondominant gill, pacific ocean, san diego, fish, scomber japonicus, chub mackerel2020-08-28v41 / 12approvedNo
642amnondominant gastrointestinal system, pacific ocean, san diego, fish, alimentary part of gastrointestinal system, scomber japonicus, chub mackerel2020-08-28v41 / 12approvedNo
642amnondominant feces, pacific ocean, san diego, digesta, fish, scomber japonicus, chub mackerel2020-08-28v41 / 13approvedNo
642amnondominant water, saline water, surface water, sea water, pacific ocean, san diego2020-08-28v41 / 13approvedNo
642amnondominant pacific ocean, san diego, fish, actinopterygian pyloric caecum, scomber japonicus, chub mackerel2020-08-28v41 / 14approvedNo
642amnoncommon gill, pacific ocean, san diego, fish, scomber japonicus, chub mackerel2020-08-28v41 / 14approvedNo
642amnoncommon feces, pacific ocean, digesta, fish, san diego, scomber japonicus, chub mackerel2020-08-28v41 / 18approvedNo
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to feces digesta in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 21approvedNo
642amnon high in winter season compared to summer season in gill pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 37approvedNo
642amnon high in water saline water sea water compared to sediment marine sediment in pacific ocean san diego 2020-08-28v41 / 56approvedNo
642amnon high in summer season compared to winter season in gill pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 62approvedNo
642amnon high in skin scomber japonicus chub mackerel compared to water saline water sea water in pacific ocean san diego 2020-08-28v41 / 67approvedNo
642amnon high in skin epidermis compared to gill in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 100approvedNo
642amnon high in water saline water sea water compared to skin scomber japonicus chub mackerel in pacific ocean san diego 2020-08-28v41 / 103approvedNo
642amnon high in gastrointestinal system alimentary part of gastrointestinal system compared to gill in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 111approvedNo
642amnon high in gill compared to skin epidermis in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 280approvedNo
642amnoncommon sediment, marine sediment, pacific ocean, san diego2020-08-28v41 / 404approvedNo
642amnon high in gill compared to gastrointestinal system alimentary part of gastrointestinal system in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 434approvedNo
642amnon high in feces digesta compared to gastrointestinal system alimentary part of gastrointestinal system in pacific ocean san diego fish scomber japonicus chub mackerel 2020-08-28v41 / 628approvedNo
642amnon high in sediment marine sediment compared to water saline water sea water in pacific ocean san diego 2020-08-28v41 / 3217approvedNo

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