dbBact

Field	Description
name	us nativity and dietary acculturation impact the gut microbiome in a diverse us population
sra	prjna559143
doi	https://doi.org/10.1038/s41396-020-0630-6
datamd5	acc8b806d92b4e952aad7b4a69c36ec1
mapmd5	e99d4ac6dded7023194ad11417e5e45c

term enrichment score

Term	Score
asian	0.320000
european	0.214286
caucasian	0.193548
african american	0.173913
bacteroides plebeius	0.133333
seaweed degrading	0.133333
state of new york	0.132597
LOWER IN asian	0.125000
LOWER IN european	0.117647
LOWER IN caucasian	0.111111
LOWER IN body mass index	0.111111
body mass index	0.100000
low bmi	0.090909
LOWER IN low bmi	0.090909
LOWER IN high bmi	0.086957
high bmi	0.074074
LOWER IN male	0.051282
LOWER IN female	0.047619
male	0.031746
female	0.021505
adult	0.008160
united states of america	0.006687
homo sapiens	0.005234
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
bacteroides plebeius	0.500000
seaweed degrading	0.500000
LOWER IN asian	0.333333
asian	0.333333
LOWER IN european	0.250000
european	0.200000
LOWER IN caucasian	0.200000
LOWER IN body mass index	0.200000
african american	0.200000
caucasian	0.166667
body mass index	0.142857
low bmi	0.111111
LOWER IN low bmi	0.111111
LOWER IN high bmi	0.100000
state of new york	0.071429
high bmi	0.071429
LOWER IN male	0.038462
LOWER IN female	0.034483
male	0.020000
female	0.012500
adult	0.004098
united states of america	0.003356
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	0.923077
united states of america	0.923077
adult	0.923077
state of new york	0.923077
asian	0.307692
caucasian	0.230769
european	0.230769
african american	0.153846
LOWER IN asian	0.076923
LOWER IN caucasian	0.076923
LOWER IN european	0.076923
male	0.076923
LOWER IN female	0.076923
low bmi	0.076923
LOWER IN body mass index	0.076923
LOWER IN high bmi	0.076923
female	0.076923
LOWER IN male	0.076923
body mass index	0.076923
high bmi	0.076923
LOWER IN low bmi	0.076923
bacteroides plebeius	0.076923
seaweed degrading	0.076923

Number of experiments associating the term to the sequence

Term	Score
caucasian	1.000000
european	1.000000
LOWER IN asian	1.000000
feces	1.000000
homo sapiens	1.000000
united states of america	1.000000
adult	1.000000
state of new york	1.000000
asian	1.000000
LOWER IN caucasian	1.000000
LOWER IN european	1.000000
male	1.000000
LOWER IN female	1.000000
low bmi	1.000000
LOWER IN body mass index	1.000000
LOWER IN high bmi	1.000000
female	1.000000
LOWER IN male	1.000000
african american	1.000000
body mass index	1.000000
high bmi	1.000000
LOWER IN low bmi	1.000000
bacteroides plebeius	1.000000
seaweed degrading	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
650	amnon	other feces, asian, bacteroides plebeius, seaweed degrading	2020-09-12	v4	1 / 1	approved	No
650	amnon	dominant feces, homo sapiens, united states of america, adult, state of new york, asian	2020-09-09	v4	1 / 18	approved	No
650	amnon	dominant feces, homo sapiens, united states of america, adult, caucasian, state of new york, european	2020-09-09	v4	1 / 20	approved	No
650	amnon	dominant feces, homo sapiens, united states of america, adult, african american, state of new york	2020-09-09	v4	1 / 22	approved	No
650	amnon	positively correlated with BMI ( high in body mass index high bmi compared to low bmi in feces homo sapiens united states of america adult state of new york )	2020-09-09	v4	1 / 26	approved	No
650	amnon	common feces, homo sapiens, united states of america, adult, african american, state of new york	2020-09-09	v4	1 / 52	approved	No
650	amnon	common feces, homo sapiens, united states of america, adult, caucasian, state of new york, european	2020-09-09	v4	1 / 56	approved	No
650	amnon	high in female compared to male in feces homo sapiens united states of america adult state of new york	2020-09-10	v4	1 / 57	approved	No
650	amnon	common feces, homo sapiens, united states of america, adult, state of new york, asian	2020-09-09	v4	1 / 66	approved	No
650	amnon	negatively correlated with BMI ( high in low bmi compared to body mass index high bmi in feces homo sapiens united states of america adult state of new york )	2020-09-09	v4	1 / 75	approved	No
650	amnon	high in male compared to female in feces homo sapiens united states of america adult state of new york	2020-09-10	v4	1 / 82	approved	No
650	amnon	high in asian compared to caucasian european in feces homo sapiens united states of america adult state of new york	2020-09-12	v4	1 / 317	approved	No
650	amnon	high in caucasian european compared to asian in feces homo sapiens united states of america adult state of new york	2020-09-12	v4	1 / 475	approved	No

Showing 1 to 13 of 13 entries

Experiment ID: 650

Annotations for experiment: