dbBact

Experiment ID: 659

Field	Description
name	antibiotic cocktail for pediatric acute severe colitis and the microbiome: the prasco randomized controlled trial
sra	prjna532645
doi	10.1093/ibd/izz298
datamd5	8207972d261211bafea14db7cccaa985
mapmd5	a5606323fb6f1356fae1f395048ccb66

Annotations for experiment:

term enrichment score

Term	Score
acute severe colitis	0.666667
LOWER IN amoxicillin	0.400000
LOWER IN doxycycline	0.400000
before antibiotics	0.285714
LOWER IN vancomycin	0.250000
LOWER IN metronidazole	0.200000
LOWER IN antibiotic	0.095238
ulcerative colitis	0.086957
child	0.032787
homo sapiens	0.005277
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
acute severe colitis	0.500000
LOWER IN amoxicillin	0.500000
LOWER IN doxycycline	0.500000
before antibiotics	0.250000
LOWER IN vancomycin	0.200000
LOWER IN metronidazole	0.142857
LOWER IN antibiotic	0.055556
ulcerative colitis	0.045455
child	0.016667
homo sapiens	0.002646
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
ulcerative colitis	1.000000
child	1.000000
acute severe colitis	1.000000
before antibiotics	0.333333
LOWER IN antibiotic	0.333333
LOWER IN vancomycin	0.333333
LOWER IN metronidazole	0.333333
LOWER IN amoxicillin	0.333333
LOWER IN doxycycline	0.333333

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
homo sapiens	1.000000
ulcerative colitis	1.000000
child	1.000000
acute severe colitis	1.000000
before antibiotics	1.000000
LOWER IN antibiotic	1.000000
LOWER IN vancomycin	1.000000
LOWER IN metronidazole	1.000000
LOWER IN amoxicillin	1.000000
LOWER IN doxycycline	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
659	amnon	high in before antibiotics compared to antibiotic vancomycin metronidazole amoxicillin doxycycline in feces homo sapiens ulcerative colitis child acute severe colitis	2020-09-19	v4	1 / 16	approved	No
659	amnon	dominant feces, homo sapiens, ulcerative colitis, child, acute severe colitis	2020-09-19	v4	1 / 16	approved	No
659	amnon	common feces, homo sapiens, ulcerative colitis, child, acute severe colitis	2020-09-19	v4	1 / 27	approved	No

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