Experiment ID: 673

Field Description
namesalmonella enterica serovar typhimurium temporally modulates the enteric microbiota and host responses to overcome colonization resistance in swine
sraprjna612572
doidoi:10.1128/aem.01569-20
datamd5106cc340508db9b32477907dab4f9a5d
mapmd5c92a3e1fee6011a48a993a81b1ff1724

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.500000
salmonella enterica subsp. enterica serovar typhimurium0.500000
ascending colon0.333333
salmonellosis0.333333
LOWER IN ascending colon0.333333
province of alberta0.250000
LOWER IN salmonellosis0.250000
age 6 weeks0.142857
LOWER IN ileum0.066667
sus scrofa0.058824
pig0.058824
male organism0.058824
ileum0.052632
LOWER IN caecum0.052632
canada0.031250
caecum0.020408
male0.020408
research facility0.005348
LOWER IN control0.004762
control0.004651
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
sus scrofa1.000000
male1.000000
canada1.000000
pig1.000000
age 6 weeks1.000000
male organism1.000000
province of alberta1.000000
caecum0.642857
ascending colon0.642857
control0.571429
salmonella enterica subsp. enterica serovar typhimurium0.428571
salmonellosis0.428571
ileum0.357143
LOWER IN salmonellosis0.142857
LOWER IN salmonella enterica subsp. enterica serovar typhimurium0.142857
LOWER IN control0.142857
LOWER IN ileum0.071429
LOWER IN caecum0.071429
LOWER IN ascending colon0.071429
Number of experiments associating the term to the sequence
TermScore
caecum1.000000
ascending colon1.000000
LOWER IN ileum1.000000
control1.000000
research facility1.000000
sus scrofa1.000000
male1.000000
canada1.000000
pig1.000000
age 6 weeks1.000000
male organism1.000000
province of alberta1.000000
LOWER IN salmonellosis1.000000
LOWER IN salmonella enterica subsp. enterica serovar typhimurium1.000000
salmonella enterica subsp. enterica serovar typhimurium1.000000
salmonellosis1.000000
ileum1.000000
LOWER IN caecum1.000000
LOWER IN ascending colon1.000000
LOWER IN control1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
673amnondominant research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v41 / 13approvedNo
673amnondominant control, research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, province of alberta2020-09-28v41 / 14approvedNo
673amnoncommon research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v41 / 15approvedNo
673amnondominant research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v41 / 17approvedNo
673amnondominant control, research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, province of alberta2020-09-28v41 / 22approvedNo
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v41 / 25approvedNo
673amnoncommon control, research facility, ileum, sus scrofa, male, canada, pig, age 6 weeks, male organism, province of alberta2020-09-28v41 / 25approvedNo
673amnon high in salmonella enterica subsp. enterica serovar typhimurium salmonellosis compared to control in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v41 / 29approvedNo
673amnon high in ileum compared to caecum ascending colon in control research facility sus scrofa male canada pig age 6 weeks male organism province of alberta 2020-09-28v41 / 31approvedNo
673amnon high in control compared to salmonella enterica subsp. enterica serovar typhimurium salmonellosis in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v41 / 88approvedNo
673amnoncommon research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, salmonella enterica subsp. enterica serovar typhimurium, salmonellosis, province of alberta2020-09-28v41 / 99approvedNo
673amnon high in control compared to salmonellosis salmonella enterica subsp. enterica serovar typhimurium in research facility caecum sus scrofa male canada pig age 6 weeks ascending colon male organism province of alberta 2020-09-28v41 / 104approvedNo
673amnoncommon control, research facility, caecum, sus scrofa, male, canada, pig, age 6 weeks, ascending colon, male organism, province of alberta2020-09-28v41 / 154approvedNo
673amnon high in caecum ascending colon compared to ileum in control research facility sus scrofa male canada pig age 6 weeks male organism province of alberta 2020-09-28v41 / 228approvedNo

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