dbBact

Experiment ID: 679

Field	Description
name	association between the microbiomes of tonsil and saliva samples isolated from pediatric patients subjected to tonsillectomy for the treatment of tonsillar hyperplasia
sra	prjna615768
doi	https://doi.org/10.1038/s12276-020-00487-6
datamd5	0427eac9dd8ecd21333af4f91ccc8c49
mapmd5	7af76d7ae7f317aaa29072d2e643deeb

Annotations for experiment:

term enrichment score

Term	Score
age 5-10 years	0.500000
fasting	0.333333
tonsil	0.230769
palatine tonsil	0.230769
south korea	0.105263
LOWER IN saliva	0.080000
child	0.033333
saliva	0.030075
homo sapiens	0.005291

Fraction of dbbact annotations with this term covered by the query

Term	Score
age 5-10 years	0.333333
fasting	0.200000
tonsil	0.142857
palatine tonsil	0.142857
south korea	0.055556
LOWER IN saliva	0.050000
child	0.016949
saliva	0.015625
homo sapiens	0.002653

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
fasting	1.000000
child	1.000000
south korea	1.000000
age 5-10 years	1.000000
tonsil	0.600000
palatine tonsil	0.600000
saliva	0.400000
LOWER IN saliva	0.200000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
tonsil	1.000000
fasting	1.000000
child	1.000000
palatine tonsil	1.000000
south korea	1.000000
age 5-10 years	1.000000
LOWER IN saliva	1.000000
saliva	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
679	amnon	dominant homo sapiens, saliva, fasting, child, south korea, age 5-10 years	2028-03-02	v3	1 / 7	approved	No
679	amnon	dominant homo sapiens, tonsil, fasting, child, palatine tonsil, south korea, age 5-10 years	2028-03-02	v3	1 / 19	approved	No
679	amnon	common homo sapiens, saliva, fasting, child, south korea, age 5-10 years	2028-03-02	v3	1 / 38	approved	No
679	amnon	high in tonsil palatine tonsil compared to saliva in homo sapiens fasting child south korea age 5-10 years	2028-03-02	v3	1 / 41	approved	No
679	amnon	common homo sapiens, tonsil, fasting, child, palatine tonsil, south korea, age 5-10 years	2028-03-02	v3	1 / 64	approved	No

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