dbBact

Experiment ID: 683

Field	Description
name	antibiotics-driven gut microbiome perturbation alters immunity to vaccines in humans
sra	prjna505336
doi	https://doi.org/10.1016/j.cell.2019.08.010
datamd5	1023c166accf1dd7f41fad925fd5a533
mapmd5	3829d2d53e477c35ae9ee5684321b6db

Annotations for experiment:

term enrichment score

Term	Score
vancomycin	0.333333
neomycin	0.333333
metronidazole	0.250000
LOWER IN neomycin	0.222222
LOWER IN vancomycin	0.181818
LOWER IN metronidazole	0.153846
antibiotic	0.090909
LOWER IN antibiotic	0.083333
state of california	0.058824
LOWER IN control	0.008929
control	0.008734
adult	0.008163
united states of america	0.006689
homo sapiens	0.005236
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN neomycin	0.333333
vancomycin	0.250000
neomycin	0.250000
LOWER IN vancomycin	0.200000
metronidazole	0.166667
LOWER IN metronidazole	0.142857
LOWER IN antibiotic	0.055556
antibiotic	0.050000
state of california	0.030303
LOWER IN control	0.004587
control	0.004484
adult	0.004098
united states of america	0.003356
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
united states of america	1.000000
adult	1.000000
state of california	1.000000
antibiotic	0.500000
vancomycin	0.500000
metronidazole	0.500000
neomycin	0.500000
control	0.166667
LOWER IN antibiotic	0.166667
LOWER IN vancomycin	0.166667
LOWER IN metronidazole	0.166667
LOWER IN neomycin	0.166667
LOWER IN control	0.166667

Number of experiments associating the term to the sequence

Term	Score
control	1.000000
LOWER IN antibiotic	1.000000
LOWER IN vancomycin	1.000000
LOWER IN metronidazole	1.000000
LOWER IN neomycin	1.000000
feces	1.000000
homo sapiens	1.000000
united states of america	1.000000
adult	1.000000
state of california	1.000000
antibiotic	1.000000
vancomycin	1.000000
metronidazole	1.000000
neomycin	1.000000
LOWER IN control	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
683	amnon	dominant during antibiotics treatment in feces (dominant feces, homo sapiens, united states of america, antibiotic, vancomycin, adult, state of california, metronidazole, neomycin)	2028-03-04	v4	1 / 16	approved	No
683	amnon	dominant feces, homo sapiens, united states of america, adult, state of california	2028-03-04	v4	1 / 24	approved	No
683	amnon	common during antibiotics treatment in feces (common feces, homo sapiens, united states of america, antibiotic, vancomycin, adult, state of california, metronidazole, neomycin)	2028-03-04	v4	1 / 25	approved	No
683	amnon	higher in antibiotic treatment (combined 3 antibiotics) compared to pre-treatment ( high in antibiotic vancomycin metronidazole neomycin compared to control in feces homo sapiens united states of america adult state of california )	2028-03-04	v4	1 / 55	approved	No
683	amnon	common feces, homo sapiens, united states of america, adult, state of california	2028-03-04	v4	1 / 105	approved	No
683	amnon	lower in antibiotic treatment (combined 3 antibiotics) compared to pre-treatment ( high in control compared to antibiotic vancomycin metronidazole neomycin in feces homo sapiens united states of america adult state of california )	2028-03-04	v4	1 / 301	approved	No

Showing 1 to 6 of 6 entries

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