dbBact

Experiment ID: 685

Field	Description
name	gastric helicobacter pylori infection perturbs human oral microbiota
sra	prjna419259
doi	https://doi.org/10.7717/peerj.6336
datamd5	bd72d872a826f2c8ff5174cd5cccf0ef
mapmd5	eb945223ac670f7e921605ce7e7c9678

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN evening	0.250000
evening	0.250000
LOWER IN morning	0.250000
LOWER IN helicobacter pylori infectious disease	0.250000
helicobacter pylori infectious disease	0.222222
morning	0.200000
mouth mucosa	0.166667
oral cavity	0.095238
australia	0.062500
LOWER IN control	0.009050
control	0.008850
adult	0.008264
homo sapiens	0.005291

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN evening	0.500000
evening	0.500000
LOWER IN morning	0.500000
LOWER IN helicobacter pylori infectious disease	0.500000
helicobacter pylori infectious disease	0.333333
morning	0.250000
mouth mucosa	0.090909
oral cavity	0.050000
australia	0.032258
LOWER IN control	0.004651
control	0.004545
adult	0.004149
homo sapiens	0.002653

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
oral cavity	1.000000
mouth mucosa	1.000000
adult	1.000000
australia	1.000000
morning	0.166667
LOWER IN evening	0.166667
helicobacter pylori infectious disease	0.166667
LOWER IN control	0.166667
evening	0.166667
LOWER IN morning	0.166667
control	0.166667
LOWER IN helicobacter pylori infectious disease	0.166667

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
oral cavity	1.000000
mouth mucosa	1.000000
adult	1.000000
australia	1.000000
morning	1.000000
LOWER IN evening	1.000000
helicobacter pylori infectious disease	1.000000
LOWER IN control	1.000000
evening	1.000000
LOWER IN morning	1.000000
control	1.000000
LOWER IN helicobacter pylori infectious disease	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
685	amnon	high in control compared to helicobacter pylori infectious disease in homo sapiens oral cavity mouth mucosa adult australia	2028-03-08	v3	1 / 4	approved	No
685	amnon	high in evening compared to morning in homo sapiens oral cavity mouth mucosa adult australia	2028-03-08	v3	1 / 5	approved	No
685	amnon	high in helicobacter pylori infectious disease compared to control in homo sapiens oral cavity mouth mucosa adult australia	2028-03-08	v3	1 / 7	approved	No
685	amnon	dominant homo sapiens, oral cavity, mouth mucosa, adult, australia	2028-03-08	v3	1 / 15	approved	No
685	amnon	high in morning compared to evening in homo sapiens oral cavity mouth mucosa adult australia	2028-03-08	v3	1 / 24	approved	No
685	amnon	common homo sapiens, oral cavity, mouth mucosa, adult, australia	2028-03-08	v3	1 / 27	approved	No

Problems / suggestions? Please visit the dbBact forum