dbBact

Experiment ID: 688

Field	Description
name	evaluating the profound effect of gut microbiome on host appetite in pigs
sra	prjna356465
doi	https://doi.org/10.1186/s12866-018-1364-8
datamd5	efb2335addec78459c9ceb057e0dbd6c
mapmd5	eb91d87423c99fa08593c21359294ff1

Annotations for experiment:

term enrichment score

Term	Score
duroc pig	0.666667
nanchang city prefecture	0.500000
age 140 days	0.500000
LOWER IN male organism	0.200000
LOWER IN female organism	0.153846
sus scrofa	0.111111
pig	0.111111
male organism	0.095238
female organism	0.086957
LOWER IN male	0.066667
LOWER IN female	0.060606
male	0.037037
female	0.024096
research facility	0.010471
china	0.009524
feces	0.004619

Fraction of dbbact annotations with this term covered by the query

Term	Score
duroc pig	0.500000
nanchang city prefecture	0.333333
age 140 days	0.333333
LOWER IN male organism	0.166667
LOWER IN female organism	0.111111
sus scrofa	0.058824
pig	0.058824
male organism	0.058824
female organism	0.052632
LOWER IN male	0.038462
LOWER IN female	0.034483
male	0.020000
female	0.012658
research facility	0.005263
china	0.004785
feces	0.002315

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
research facility	1.000000
sus scrofa	1.000000
nanchang city prefecture	1.000000
pig	1.000000
china	1.000000
duroc pig	1.000000
age 140 days	1.000000
female	0.250000
female organism	0.250000
LOWER IN male	0.250000
LOWER IN male organism	0.250000
male	0.250000
male organism	0.250000
LOWER IN female	0.250000
LOWER IN female organism	0.250000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
research facility	1.000000
sus scrofa	1.000000
nanchang city prefecture	1.000000
pig	1.000000
china	1.000000
duroc pig	1.000000
age 140 days	1.000000
female	1.000000
female organism	1.000000
LOWER IN male	1.000000
LOWER IN male organism	1.000000
male	1.000000
male organism	1.000000
LOWER IN female	1.000000
LOWER IN female organism	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
688	amnon	dominant feces, research facility, sus scrofa, nanchang city prefecture, pig, china, duroc pig, age 140 days	2028-03-09	v4	1 / 17	approved	No
688	amnon	high in male male organism compared to female female organism in feces research facility sus scrofa nanchang city prefecture pig china duroc pig age 140 days	2028-03-09	v4	1 / 39	approved	No
688	amnon	high in female female organism compared to male male organism in feces research facility sus scrofa nanchang city prefecture pig china duroc pig age 140 days	2028-03-09	v4	1 / 239	approved	No
688	amnon	common feces, research facility, sus scrofa, nanchang city prefecture, pig, china, duroc pig, age 140 days	2028-03-09	v4	1 / 278	approved	No

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