Experiment ID: 710

Field Description
namea quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
sraprjna575097
doihttps://doi.org/10.1038/s41467-020-16224-6
datamd5d0517eabd64c1970834fc8c8a5fe442e
mapmd5a8529cc86fa78ca87dbeb78570d6af66

Annotations for experiment:

term enrichment score
TermScore
swiss webster0.484848
ketogenic diet0.250000
LOWER IN ketogenic diet0.142857
contaminant0.142857
LOWER IN small intestine0.133333
small intestine0.133333
mouse chow0.117647
LOWER IN stomach0.105263
control diet0.100000
LOWER IN mouse chow0.080000
LOWER IN control diet0.076923
stomach0.076923
state of california0.062500
LOWER IN feces0.052632
mouse0.030246
mus musculus0.027350
research facility0.010745
united states of america0.006873
feces0.004762
Fraction of dbbact annotations with this term covered by the query
TermScore
swiss webster0.333333
ketogenic diet0.200000
LOWER IN ketogenic diet0.200000
contaminant0.200000
LOWER IN small intestine0.166667
small intestine0.166667
LOWER IN stomach0.100000
mouse chow0.071429
LOWER IN mouse chow0.062500
control diet0.058824
LOWER IN control diet0.058824
stomach0.058824
LOWER IN feces0.034483
state of california0.032258
mouse0.015385
mus musculus0.013889
research facility0.005405
united states of america0.003448
feces0.002398
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
state of california1.000000
research facility0.888889
mus musculus0.888889
mouse0.888889
swiss webster0.888889
feces0.333333
mouse chow0.333333
control diet0.333333
ketogenic diet0.333333
LOWER IN stomach0.111111
LOWER IN small intestine0.111111
LOWER IN mouse chow0.111111
LOWER IN control diet0.111111
LOWER IN ketogenic diet0.111111
contaminant0.111111
contamination0.111111
stomach0.111111
small intestine0.111111
LOWER IN feces0.111111
Number of experiments associating the term to the sequence
TermScore
feces1.000000
LOWER IN stomach1.000000
LOWER IN small intestine1.000000
united states of america1.000000
research facility1.000000
mus musculus1.000000
state of california1.000000
mouse1.000000
swiss webster1.000000
mouse chow1.000000
control diet1.000000
ketogenic diet1.000000
LOWER IN mouse chow1.000000
LOWER IN control diet1.000000
LOWER IN ketogenic diet1.000000
contaminant1.000000
contamination1.000000
stomach1.000000
small intestine1.000000
LOWER IN feces1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
710amnon high in stomach small intestine compared to feces in united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v41 / 4approvedNo
710amnondominant united states of america, research facility, mus musculus, state of california, mouse, mouse chow, swiss webster, control diet2028-05-20v41 / 13approvedNo
710amnondominant united states of america, research facility, mus musculus, state of california, mouse, ketogenic diet, swiss webster2028-05-20v41 / 16approvedNo
710amnonsuspected contaminant (common in blanks) (contamination)2028-05-20v41 / 28approvedNo
710amnon high in mouse chow control diet compared to ketogenic diet in feces united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v41 / 49approvedNo
710amnon high in ketogenic diet compared to mouse chow control diet in feces united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v41 / 107approvedNo
710amnoncommon united states of america, research facility, mus musculus, state of california, mouse, ketogenic diet, swiss webster2028-05-20v41 / 141approvedNo
710amnoncommon united states of america, research facility, mus musculus, state of california, mouse, mouse chow, swiss webster, control diet2028-05-20v41 / 151approvedNo
710amnon high in feces compared to stomach small intestine in united states of america research facility mus musculus state of california mouse swiss webster 2028-05-20v41 / 329approvedNo

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