dbBact

Experiment ID: 724

Field	Description
name	changes in vaginal microbiome in pregnant and nonpregnant women with bacterial vaginosis: toward microbiome diagnostics?
sra	prjna616046
doi	https://doi.org/10.1089/omi.2020.0096
datamd5	490afd3b18d4e32228409f57dc4d982d
mapmd5	ef566491c21797e0977adc73d39d3d13

Annotations for experiment:

term enrichment score

Term	Score
ismailia	0.666667
age 25-45 years	0.500000
non-pregnant	0.400000
second trimester pregnancy stage	0.400000
egypt	0.285714
LOWER IN pregnancy	0.222222
LOWER IN second trimester pregnancy stage	0.222222
LOWER IN non-pregnant	0.222222
vagina	0.125000
pregnancy	0.117647
female	0.025000
adult	0.008264
homo sapiens	0.005277

Fraction of dbbact annotations with this term covered by the query

Term	Score
ismailia	0.500000
non-pregnant	0.333333
LOWER IN pregnancy	0.333333
LOWER IN second trimester pregnancy stage	0.333333
age 25-45 years	0.333333
second trimester pregnancy stage	0.333333
LOWER IN non-pregnant	0.333333
egypt	0.166667
vagina	0.066667
pregnancy	0.066667
female	0.012658
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
female	1.000000
vagina	1.000000
adult	1.000000
egypt	1.000000
ismailia	1.000000
age 25-45 years	1.000000
non-pregnant	0.500000
pregnancy	0.500000
second trimester pregnancy stage	0.500000
LOWER IN pregnancy	0.166667
LOWER IN second trimester pregnancy stage	0.166667
LOWER IN non-pregnant	0.166667

Number of experiments associating the term to the sequence

Term	Score
non-pregnant	1.000000
LOWER IN pregnancy	1.000000
LOWER IN second trimester pregnancy stage	1.000000
homo sapiens	1.000000
female	1.000000
vagina	1.000000
adult	1.000000
egypt	1.000000
ismailia	1.000000
age 25-45 years	1.000000
pregnancy	1.000000
second trimester pregnancy stage	1.000000
LOWER IN non-pregnant	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
724	amnon	high in pregnancy second trimester pregnancy stage compared to non-pregnant in homo sapiens female vagina adult egypt ismailia age 25-45 years	2021-01-03	v3	1 / 10	approved	No
724	amnon	dominant homo sapiens, female, vagina, adult, egypt, ismailia, age 25-45 years, non-pregnant	2021-01-03	v3	1 / 10	approved	No
724	amnon	dominant homo sapiens, female, pregnancy, vagina, adult, egypt, ismailia, age 25-45 years, second trimester pregnancy stage	2021-01-03	v3	1 / 12	approved	No
724	amnon	common homo sapiens, female, vagina, adult, egypt, ismailia, age 25-45 years, non-pregnant	2021-01-03	v3	1 / 17	approved	No
724	amnon	common homo sapiens, female, pregnancy, vagina, adult, egypt, ismailia, age 25-45 years, second trimester pregnancy stage	2021-01-03	v3	1 / 18	approved	No
724	amnon	high in non-pregnant compared to pregnancy second trimester pregnancy stage in homo sapiens female vagina adult egypt ismailia age 25-45 years	2021-01-03	v3	1 / 29	approved	No

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