dbBact

Experiment ID: 776

Field	Description
name	cecal microbiome profile of hawaiian feral chickens and pasture-raised broiler (commercial) chickens determined using 16s rrna amplicon sequencing
sra	prjna644775
doi	https://doi.org/10.1016/j.psj.2021.101181
datamd5	2eae5b7b9cc2589ea6c8d0c3353a65cd
mapmd5	c5f30b069ec422fbce7e0b0eca0ea8ab

Annotations for experiment:

term enrichment score

Term	Score
age 15-20 weeks	0.500000
feral	0.500000
hawaii	0.333333
age 5 weeks	0.333333
LOWER IN age 15-20 weeks	0.250000
LOWER IN feral	0.250000
LOWER IN broiler chicken	0.200000
LOWER IN age 5 weeks	0.200000
broiler chicken	0.181818
LOWER IN research facility	0.153846
LOWER IN captive	0.142857
LOWER IN wild	0.100000
chicken	0.090909
gallus gallus	0.086957
captive	0.060606
wild	0.052632
caecum	0.039216
research facility	0.010417

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN age 15-20 weeks	0.500000
LOWER IN feral	0.500000
age 15-20 weeks	0.500000
feral	0.500000
age 5 weeks	0.250000
LOWER IN broiler chicken	0.250000
LOWER IN age 5 weeks	0.250000
hawaii	0.200000
LOWER IN research facility	0.142857
LOWER IN captive	0.125000
broiler chicken	0.111111
LOWER IN wild	0.071429
chicken	0.047619
gallus gallus	0.045455
captive	0.032258
wild	0.027778
caecum	0.020000
research facility	0.005263

Fraction of annotations for the query sequences containing the term

Term	Score
caecum	1.000000
gallus gallus	1.000000
hawaii	1.000000
chicken	1.000000
research facility	0.500000
captive	0.500000
broiler chicken	0.500000
age 5 weeks	0.500000
age 15-20 weeks	0.500000
feral	0.500000
wild	0.500000
LOWER IN age 15-20 weeks	0.166667
LOWER IN feral	0.166667
LOWER IN wild	0.166667
LOWER IN research facility	0.166667
LOWER IN captive	0.166667
LOWER IN broiler chicken	0.166667
LOWER IN age 5 weeks	0.166667

Number of experiments associating the term to the sequence

Term	Score
research facility	1.000000
caecum	1.000000
gallus gallus	1.000000
hawaii	1.000000
chicken	1.000000
captive	1.000000
broiler chicken	1.000000
age 5 weeks	1.000000
LOWER IN age 15-20 weeks	1.000000
LOWER IN feral	1.000000
LOWER IN wild	1.000000
age 15-20 weeks	1.000000
feral	1.000000
wild	1.000000
LOWER IN research facility	1.000000
LOWER IN captive	1.000000
LOWER IN broiler chicken	1.000000
LOWER IN age 5 weeks	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
776	amnon	dominant research facility, caecum, gallus gallus, hawaii, chicken, captive, broiler chicken, age 5 weeks	2021-04-25	v3	1 / 17	approved	No
776	amnon	dominant caecum, gallus gallus, hawaii, chicken, age 15-20 weeks, feral, wild	2021-04-25	v3	1 / 26	approved	No
776	amnon	high in age 15-20 weeks feral wild compared to research facility captive broiler chicken age 5 weeks in caecum gallus gallus hawaii chicken	2021-04-25	v3	1 / 107	approved	No
776	amnon	common caecum, gallus gallus, hawaii, chicken, age 15-20 weeks, feral, wild	2021-04-25	v3	1 / 191	approved	No
776	amnon	high in research facility captive broiler chicken age 5 weeks compared to age 15-20 weeks feral wild in caecum gallus gallus hawaii chicken	2021-04-25	v3	1 / 252	approved	No
776	amnon	common research facility, caecum, gallus gallus, hawaii, chicken, captive, broiler chicken, age 5 weeks	2021-04-25	v3	1 / 343	approved	No

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