dbBact

Experiment ID: 780

Field	Description
name	probiotic properties of lactobacillus paracasei subsp. paracasei l1 and its growth performance-promotion in chicken by improving the intestinal microflora
sra	prjna524459
doi	https://doi.org/10.3389/fphys.2019.00937
datamd5	73b749de8949c9044c28281069600ecd
mapmd5	351a03769922adcf4b4eca70cbccfc52

Annotations for experiment:

term enrichment score

Term	Score
jinzhou city prefecture	0.666667
small intestine	0.250000
jejunum	0.181818
LOWER IN small intestine	0.166667
LOWER IN jejunum	0.142857
duodenum	0.117647
LOWER IN duodenum	0.111111
chicken	0.090909
gallus gallus	0.086957
LOWER IN caecum	0.080000
caecum	0.038462
research facility	0.010471
china	0.009524

Fraction of dbbact annotations with this term covered by the query

Term	Score
jinzhou city prefecture	0.500000
small intestine	0.166667
LOWER IN small intestine	0.166667
LOWER IN jejunum	0.125000
jejunum	0.111111
LOWER IN duodenum	0.083333
duodenum	0.066667
LOWER IN caecum	0.052632
chicken	0.047619
gallus gallus	0.045455
caecum	0.020000
research facility	0.005263
china	0.004785

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
gallus gallus	1.000000
chicken	1.000000
china	1.000000
jinzhou city prefecture	1.000000
caecum	0.500000
small intestine	0.500000
duodenum	0.500000
jejunum	0.500000
LOWER IN small intestine	0.166667
LOWER IN duodenum	0.166667
LOWER IN jejunum	0.166667
LOWER IN caecum	0.166667

Number of experiments associating the term to the sequence

Term	Score
research facility	1.000000
caecum	1.000000
gallus gallus	1.000000
chicken	1.000000
china	1.000000
jinzhou city prefecture	1.000000
small intestine	1.000000
duodenum	1.000000
jejunum	1.000000
LOWER IN small intestine	1.000000
LOWER IN duodenum	1.000000
LOWER IN jejunum	1.000000
LOWER IN caecum	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
780	amnon	dominant research facility, small intestine, duodenum, jejunum, gallus gallus, chicken, china, jinzhou city prefecture	2021-04-28	v3	1 / 10	approved	No
780	amnon	dominant research facility, caecum, gallus gallus, chicken, china, jinzhou city prefecture	2021-04-28	v3	1 / 18	approved	No
780	amnon	high in small intestine duodenum jejunum compared to caecum in research facility gallus gallus chicken china jinzhou city prefecture	2021-04-28	v3	1 / 153	approved	No
780	amnon	high in caecum compared to small intestine duodenum jejunum in research facility gallus gallus chicken china jinzhou city prefecture	2021-04-28	v3	1 / 212	approved	No
780	amnon	common research facility, small intestine, duodenum, jejunum, gallus gallus, chicken, china, jinzhou city prefecture	2021-04-28	v3	1 / 232	approved	No
780	amnon	common research facility, caecum, gallus gallus, chicken, china, jinzhou city prefecture	2021-04-28	v3	1 / 294	approved	No

Problems / suggestions? Please visit the dbBact forum