dbBact

Experiment ID: 851

Field	Description
name	body mass index and sex affect diverse microbial niches within the gut
sra	prjna401981
doi	https://doi.org/10.3389/fmicb.2018.00213
datamd5	c0770e5333fd97037abc754ebcb84628
mapmd5	8fbe518c0aca44dcfbdf8bf7ded6d785

Annotations for experiment:

term enrichment score

Term	Score
sigmoid colon brushing	0.500000
milan	0.400000
colonic mucosa	0.333333
sigmoid colon	0.333333
LOWER IN sigmoid colon	0.250000
LOWER IN sigmoid colon brushing	0.250000
LOWER IN colonic mucosa	0.222222
italy	0.060606
LOWER IN feces	0.055556
adult	0.008264
homo sapiens	0.005277
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
sigmoid colon brushing	0.500000
LOWER IN sigmoid colon	0.500000
LOWER IN sigmoid colon brushing	0.500000
LOWER IN colonic mucosa	0.333333
colonic mucosa	0.250000
sigmoid colon	0.250000
milan	0.250000
LOWER IN feces	0.033333
italy	0.031250
adult	0.004149
homo sapiens	0.002646
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
adult	1.000000
italy	1.000000
milan	1.000000
colonic mucosa	0.500000
sigmoid colon	0.500000
sigmoid colon brushing	0.500000
feces	0.500000
LOWER IN feces	0.166667
LOWER IN colonic mucosa	0.166667
LOWER IN sigmoid colon	0.166667
LOWER IN sigmoid colon brushing	0.166667

Number of experiments associating the term to the sequence

Term	Score
colonic mucosa	1.000000
sigmoid colon	1.000000
sigmoid colon brushing	1.000000
LOWER IN feces	1.000000
homo sapiens	1.000000
adult	1.000000
italy	1.000000
milan	1.000000
feces	1.000000
LOWER IN colonic mucosa	1.000000
LOWER IN sigmoid colon	1.000000
LOWER IN sigmoid colon brushing	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
851	amnon	dominant feces, homo sapiens, adult, italy, milan	2021-12-16	v3	1 / 20	approved	No
851	amnon	dominant homo sapiens, colonic mucosa, sigmoid colon, adult, italy, milan, sigmoid colon brushing	2021-12-16	v3	1 / 22	approved	No
851	amnon	common feces, homo sapiens, adult, italy, milan	2021-12-16	v3	1 / 62	approved	No
851	amnon	common homo sapiens, colonic mucosa, sigmoid colon, adult, italy, milan, sigmoid colon brushing	2021-12-16	v3	1 / 71	approved	No
851	amnon	high in feces compared to colonic mucosa sigmoid colon sigmoid colon brushing in homo sapiens adult italy milan	2021-12-16	v3	1 / 132	approved	No
851	amnon	high in colonic mucosa sigmoid colon sigmoid colon brushing compared to feces in homo sapiens adult italy milan	2021-12-16	v3	1 / 174	approved	No

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