dbBact

Experiment ID: 853

Field	Description
name	developmental stage, solid food introduction and suckling cessation differentially influence the co-maturation of the gut microbiota and intestinal epithelium in rabbits
sra	prjna699723
doi	https://doi.org/10.1093/jn/nxab411
datamd5	365d1c2a594957cb3f70bef432329a89
mapmd5	47a90abb2187b8514fae366cb81461ad

Annotations for experiment:

term enrichment score

Term	Score
hyplus rabbit	0.666667
exclusive breastmilk diet	0.583333
juvenile	0.500000
solid food supplemented diet	0.375000
solid food diet	0.375000
age 5 weeks	0.368421
rabbit	0.333333
cecal content	0.250000
age 3 weeks	0.240000
oryctolagus cuniculus	0.200000
LOWER IN exclusive breastmilk diet	0.166667
LOWER IN solid food supplemented diet	0.166667
LOWER IN solid food diet	0.166667
LOWER IN age 3 weeks	0.142857
LOWER IN age 5 weeks	0.142857
french republic	0.125000
caecum	0.040000
research facility	0.010638

Fraction of dbbact annotations with this term covered by the query

Term	Score
hyplus rabbit	0.500000
solid food supplemented diet	0.500000
solid food diet	0.500000
exclusive breastmilk diet	0.500000
LOWER IN exclusive breastmilk diet	0.500000
LOWER IN solid food supplemented diet	0.500000
LOWER IN solid food diet	0.500000
juvenile	0.333333
age 5 weeks	0.250000
LOWER IN age 3 weeks	0.250000
LOWER IN age 5 weeks	0.250000
rabbit	0.200000
age 3 weeks	0.200000
cecal content	0.142857
oryctolagus cuniculus	0.111111
french republic	0.066667
caecum	0.020408
research facility	0.005348

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
oryctolagus cuniculus	1.000000
french republic	1.000000
cecal content	1.000000
rabbit	1.000000
caecum	1.000000
juvenile	1.000000
hyplus rabbit	1.000000
age 5 weeks	0.700000
exclusive breastmilk diet	0.700000
solid food supplemented diet	0.300000
solid food diet	0.300000
age 3 weeks	0.300000
LOWER IN exclusive breastmilk diet	0.100000
LOWER IN age 3 weeks	0.100000
LOWER IN solid food supplemented diet	0.100000
LOWER IN solid food diet	0.100000
LOWER IN age 5 weeks	0.100000

Number of experiments associating the term to the sequence

Term	Score
research facility	1.000000
oryctolagus cuniculus	1.000000
french republic	1.000000
cecal content	1.000000
rabbit	1.000000
caecum	1.000000
juvenile	1.000000
age 5 weeks	1.000000
hyplus rabbit	1.000000
solid food supplemented diet	1.000000
solid food diet	1.000000
exclusive breastmilk diet	1.000000
age 3 weeks	1.000000
LOWER IN exclusive breastmilk diet	1.000000
LOWER IN age 3 weeks	1.000000
LOWER IN solid food supplemented diet	1.000000
LOWER IN solid food diet	1.000000
LOWER IN age 5 weeks	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
853	amnon	dominant research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, solid food supplemented diet, solid food diet	2021-12-20	v3	1 / 21	approved	No
853	amnon	high in age 3 weeks compared to age 5 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet	2021-12-18	v3	1 / 23	approved	No
853	amnon	dominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet	2021-12-18	v3	1 / 24	approved	No
853	amnon	dominant research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet	2021-12-20	v3	1 / 24	approved	No
853	amnon	high in exclusive breastmilk diet compared to solid food supplemented diet solid food diet in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile age 5 weeks hyplus rabbit	2021-12-20	v3	1 / 47	approved	No
853	amnon	high in age 5 weeks compared to age 3 weeks in research facility caecum oryctolagus cuniculus french republic cecal content rabbit juvenile hyplus rabbit exclusive breastmilk diet	2021-12-18	v3	1 / 49	approved	No
853	amnon	high in solid food supplemented diet solid food diet compared to exclusive breastmilk diet in research facility oryctolagus cuniculus french republic cecal content rabbit caecum juvenile age 5 weeks hyplus rabbit	2021-12-20	v3	1 / 71	approved	No
853	amnon	common research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, age 3 weeks, juvenile, hyplus rabbit, exclusive breastmilk diet	2021-12-18	v3	1 / 82	approved	No
853	amnon	common research facility, caecum, oryctolagus cuniculus, french republic, cecal content, rabbit, juvenile, age 5 weeks, hyplus rabbit, exclusive breastmilk diet	2021-12-20	v3	1 / 96	approved	No
853	amnon	common research facility, oryctolagus cuniculus, french republic, cecal content, rabbit, caecum, juvenile, age 5 weeks, hyplus rabbit, solid food supplemented diet, solid food diet	2021-12-20	v3	1 / 114	approved	No

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