dbBact

Experiment ID: 856

Field	Description
name	ecological and network analyses identify four microbial species with potential significance for the diagnosis/treatment of ulcerative colitis (uc)
sra	prjna600852
doi	https://doi.org/10.1186/s12866-021-02201-6
datamd5	2e021103674cad56d1682c40b9553604
mapmd5	383bd214e5e592dc0533d81bc96fa7bf

Annotations for experiment:

term enrichment score

Term	Score
intestinal mucosa	0.666667
biopsy	0.200000
rectum	0.153846
ulcerative colitis	0.086022
LOWER IN ulcerative colitis	0.085106
human adult stage	0.046512
china	0.009524
control	0.008982
adult	0.008264
homo sapiens	0.005277

Fraction of dbbact annotations with this term covered by the query

Term	Score
intestinal mucosa	0.500000
biopsy	0.111111
rectum	0.083333
LOWER IN ulcerative colitis	0.047619
ulcerative colitis	0.045455
human adult stage	0.023810
china	0.004785
control	0.004525
adult	0.004149
homo sapiens	0.002646

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
rectum	1.000000
adult	1.000000
biopsy	1.000000
intestinal mucosa	1.000000
china	1.000000
human adult stage	1.000000
ulcerative colitis	0.800000
control	0.600000
LOWER IN ulcerative colitis	0.400000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
control	1.000000
rectum	1.000000
adult	1.000000
biopsy	1.000000
intestinal mucosa	1.000000
china	1.000000
human adult stage	1.000000
ulcerative colitis	1.000000
LOWER IN ulcerative colitis	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
856	amnon	high in control compared to ulcerative colitis ulcerative colitis in homo sapiens rectum adult biopsy intestinal mucosa china human adult stage	2022-01-09	v3	1 / 6	approved	No
856	amnon	dominant homo sapiens, control, rectum, adult, biopsy, intestinal mucosa, china, human adult stage	2022-01-09	v3	1 / 23	approved	No
856	amnon	dominant homo sapiens, rectum, ulcerative colitis, adult, biopsy, intestinal mucosa, ulcerative colitis, china, human adult stage	2022-01-09	v3	1 / 25	approved	No
856	amnon	common homo sapiens, rectum, ulcerative colitis, adult, biopsy, intestinal mucosa, ulcerative colitis, china, human adult stage	2022-01-09	v3	1 / 33	approved	No
856	amnon	common homo sapiens, control, rectum, adult, biopsy, intestinal mucosa, china, human adult stage	2022-01-09	v3	1 / 48	approved	No

Problems / suggestions? Please visit the dbBact forum