dbBact

Experiment ID: 859

Field	Description
name	lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in hispanic infants
name	prjna589488
doi	https://doi.org/10.1080/19490976.2020.1813534
datamd5	8b221986f01a2c8ebcaaeead87f0aed5
mapmd5	8eacc305494a7961efc029b5964c03fd

Annotations for experiment:

term enrichment score

Term	Score
los angeles district	0.666667
hispanic	0.500000
hispanic or latin american	0.400000
breast fed	0.312500
formula fed	0.270270
6-month-old human stage	0.259259
1-month-old human stage	0.192308
LOWER IN 6-month-old human stage	0.142857
LOWER IN formula fed	0.125000
LOWER IN breast fed	0.117647
LOWER IN 1-month-old human stage	0.111111
state of california	0.058824
infant	0.052632
homo sapiens	0.005236
feces	0.004587

Fraction of dbbact annotations with this term covered by the query

Term	Score
los angeles district	0.500000
LOWER IN 6-month-old human stage	0.500000
hispanic	0.333333
hispanic or latin american	0.250000
breast fed	0.250000
LOWER IN formula fed	0.250000
formula fed	0.200000
LOWER IN breast fed	0.200000
6-month-old human stage	0.166667
LOWER IN 1-month-old human stage	0.166667
1-month-old human stage	0.125000
state of california	0.030303
infant	0.027027
homo sapiens	0.002625
feces	0.002299

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
infant	1.000000
state of california	1.000000
hispanic or latin american	1.000000
los angeles district	1.000000
hispanic	1.000000
6-month-old human stage	0.583333
formula fed	0.416667
breast fed	0.416667
1-month-old human stage	0.416667
LOWER IN 1-month-old human stage	0.083333
LOWER IN breast fed	0.083333
LOWER IN formula fed	0.083333
LOWER IN 6-month-old human stage	0.083333

Number of experiments associating the term to the sequence

Term	Score
6-month-old human stage	1.000000
LOWER IN 1-month-old human stage	1.000000
feces	1.000000
homo sapiens	1.000000
infant	1.000000
state of california	1.000000
hispanic or latin american	1.000000
los angeles district	1.000000
hispanic	1.000000
formula fed	1.000000
LOWER IN breast fed	1.000000
breast fed	1.000000
LOWER IN formula fed	1.000000
1-month-old human stage	1.000000
LOWER IN 6-month-old human stage	1.000000

Search:

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
859	amnon	high in 1-month-old human stage compared to 6-month-old human stage in feces homo sapiens infant state of california hispanic or latin american los angeles district hispanic	2022-01-12	v4	1 / 8	approved	No
859	amnon	common feces, homo sapiens, infant, state of california, formula fed, hispanic or latin american, los angeles district, hispanic, 1-month-old human stage	2022-01-12	v4	1 / 10	approved	No
859	amnon	common feces, homo sapiens, infant, state of california, breast fed, hispanic or latin american, los angeles district, hispanic, 1-month-old human stage	2022-01-12	v4	1 / 13	approved	No
859	amnon	common feces, homo sapiens, infant, state of california, breast fed, hispanic or latin american, los angeles district, hispanic, 6-month-old human stage	2022-01-12	v4	1 / 13	approved	No
859	amnon	dominant feces, homo sapiens, infant, state of california, breast fed, hispanic or latin american, los angeles district, hispanic, 1-month-old human stage	2022-01-12	v4	1 / 17	approved	No
859	amnon	dominant feces, homo sapiens, infant, state of california, breast fed, hispanic or latin american, los angeles district, hispanic, 6-month-old human stage	2022-01-12	v4	1 / 17	approved	No
859	amnon	common feces, homo sapiens, infant, state of california, formula fed, hispanic or latin american, los angeles district, hispanic, 6-month-old human stage	2022-01-12	v4	1 / 21	approved	No
859	amnon	high in breast fed compared to formula fed in feces homo sapiens infant state of california hispanic or latin american los angeles district hispanic 6-month-old human stage	2022-01-12	v4	1 / 22	approved	No
859	amnon	dominant feces, homo sapiens, infant, state of california, formula fed, hispanic or latin american, los angeles district, hispanic, 1-month-old human stage	2022-01-12	v4	1 / 22	approved	No
859	amnon	dominant feces, homo sapiens, infant, state of california, formula fed, hispanic or latin american, los angeles district, hispanic, 6-month-old human stage	2022-01-12	v4	1 / 25	approved	No
859	amnon	high in formula fed compared to breast fed in feces homo sapiens infant state of california hispanic or latin american los angeles district hispanic 6-month-old human stage	2022-01-12	v4	1 / 41	approved	No
859	amnon	high in 6-month-old human stage compared to 1-month-old human stage in feces homo sapiens infant state of california hispanic or latin american los angeles district hispanic	2022-01-12	v4	1 / 72	approved	No

Showing 1 to 12 of 12 entries

Problems / suggestions? Please visit the dbBact forum