Experiment ID: 861

Field Description
namegut microbiome profiling of a rural and urban south african cohort reveals biomarkers of a population in lifestyle transition
sraprjeb40733
doihttps://doi.org/10.1186/s12866-020-02017-w
datamd5eb9636635aa03bd7c257d0569d223c84
mapmd5f9acf6009bbd129c1b765d6655ea4f88

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
bushbuckridge local municipality0.500000
LOWER IN soweto0.500000
soweto0.500000
LOWER IN bushbuckridge local municipality0.500000
peri-urban community0.333333
human middle aged stage0.333333
LOWER IN peri-urban community0.333333
LOWER IN urban community0.250000
urban community0.250000
LOWER IN rural community0.125000
LOWER IN city0.100000
south africa0.090909
rural community0.058824
city0.041667
female0.012987
homo sapiens0.002762
feces0.002375
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
female1.000000
south africa1.000000
rural community0.833333
human middle aged stage0.666667
bushbuckridge local municipality0.500000
peri-urban community0.500000
city0.500000
soweto0.500000
urban community0.500000
LOWER IN city0.166667
LOWER IN soweto0.166667
LOWER IN urban community0.166667
LOWER IN rural community0.166667
LOWER IN bushbuckridge local municipality0.166667
LOWER IN peri-urban community0.166667
Number of experiments associating the term to the sequence
TermScore
rural community1.000000
bushbuckridge local municipality1.000000
peri-urban community1.000000
LOWER IN city1.000000
LOWER IN soweto1.000000
LOWER IN urban community1.000000
feces1.000000
homo sapiens1.000000
female1.000000
south africa1.000000
human middle aged stage1.000000
city1.000000
soweto1.000000
urban community1.000000
LOWER IN rural community1.000000
LOWER IN bushbuckridge local municipality1.000000
LOWER IN peri-urban community1.000000

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