Experiment ID: 873

Field Description
namepopulation structure of human gut bacteria in a diverse cohort from rural tanzania and botswana
nameprjna395034
doihttps://doi.org/10.1186/s13059-018-1616-9
datamd577befb04acab21e175eea1ae68e1526e
mapmd5afd740d786a29dda0bd97ed7f27b2187

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN botswana0.500000
LOWER IN tanzania0.500000
LOWER IN africa0.500000
botswana0.500000
LOWER IN commonwealth of pennsylvania0.500000
maasai0.500000
sandawe0.500000
burunge0.500000
LOWER IN hadza0.500000
LOWER IN maasai0.500000
LOWER IN sandawe0.500000
LOWER IN burunge0.500000
LOWER IN hunter gatherer0.333333
hadza0.333333
urban community0.250000
LOWER IN urban community0.250000
tanzania0.166667
africa0.166667
hunter gatherer0.166667
LOWER IN rural community0.125000
commonwealth of pennsylvania0.083333
LOWER IN united states of america0.083333
rural community0.058824
human adult stage0.029412
adult0.004329
united states of america0.003436
homo sapiens0.002770
feces0.002387
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
homo sapiens1.000000
adult1.000000
human adult stage1.000000
rural community0.750000
africa0.666667
tanzania0.500000
commonwealth of pennsylvania0.416667
botswana0.333333
united states of america0.250000
urban community0.250000
LOWER IN botswana0.166667
LOWER IN tanzania0.166667
LOWER IN africa0.083333
LOWER IN rural community0.083333
LOWER IN united states of america0.083333
LOWER IN commonwealth of pennsylvania0.083333
LOWER IN urban community0.083333
maasai0.083333
sandawe0.083333
burunge0.083333
LOWER IN hunter gatherer0.083333
LOWER IN hadza0.083333
hunter gatherer0.083333
hadza0.083333
LOWER IN maasai0.083333
LOWER IN sandawe0.083333
LOWER IN burunge0.083333
Number of experiments associating the term to the sequence
TermScore
tanzania1.000000
LOWER IN botswana1.000000
feces1.000000
homo sapiens1.000000
adult1.000000
africa1.000000
rural community1.000000
human adult stage1.000000
united states of america1.000000
commonwealth of pennsylvania1.000000
urban community1.000000
LOWER IN tanzania1.000000
LOWER IN africa1.000000
LOWER IN rural community1.000000
botswana1.000000
LOWER IN united states of america1.000000
LOWER IN commonwealth of pennsylvania1.000000
LOWER IN urban community1.000000
maasai1.000000
sandawe1.000000
burunge1.000000
LOWER IN hunter gatherer1.000000
LOWER IN hadza1.000000
hunter gatherer1.000000
hadza1.000000
LOWER IN maasai1.000000
LOWER IN sandawe1.000000
LOWER IN burunge1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
873amnondominant feces, homo sapiens, united states of america, adult, commonwealth of pennsylvania, human adult stage, urban community2022-03-03v11 / 12approvedNo
873amnondominant feces, homo sapiens, adult, tanzania, africa, rural community, human adult stage2022-03-03v11 / 14approvedNo
873amnondominant feces, homo sapiens, adult, africa, rural community, botswana, human adult stage2022-03-03v11 / 15approvedNo
873amnon high in hunter gatherer hadza compared to maasai sandawe burunge in feces homo sapiens adult tanzania africa commonwealth of pennsylvania rural community human adult stage 2022-03-03v11 / 37approvedNo
873amnon high in maasai sandawe burunge compared to hunter gatherer hadza in feces homo sapiens adult tanzania africa commonwealth of pennsylvania rural community human adult stage 2022-03-03v11 / 46approvedNo
873amnon high in tanzania rural community botswana compared to united states of america commonwealth of pennsylvania urban community in feces homo sapiens adult human adult stage 2022-03-03v11 / 73approvedNo
873amnoncommon feces, homo sapiens, adult, africa, rural community, botswana, human adult stage2022-03-03v11 / 81approvedNo
873amnoncommon feces, homo sapiens, united states of america, adult, commonwealth of pennsylvania, human adult stage, urban community2022-03-03v11 / 112approvedNo
873amnoncommon feces, homo sapiens, adult, tanzania, africa, rural community, human adult stage2022-03-03v11 / 125approvedNo
873amnon high in botswana compared to tanzania in feces homo sapiens adult africa rural community human adult stage 2022-03-03v11 / 226approvedNo
873amnon high in united states of america commonwealth of pennsylvania urban community compared to tanzania africa rural community botswana in feces homo sapiens adult human adult stage 2022-03-03v11 / 227approvedNo
873amnon high in tanzania compared to botswana in feces homo sapiens adult africa rural community human adult stage 2022-03-03v11 / 333approvedNo

Problems / suggestions? Please visit the dbBact forum